Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq4 102 7e-17 >seq1 Length=2409711 Score = 113 bits (124), Expect = 4e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||||||||||||||| | ||| ||||| | || | ||| ||| Sbjct 336345 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCATCTTCC 336404 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || ||||| |||||||||||||||| |||||||| ||||| ||||| ||||| | Sbjct 336405 AATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGG 336464 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| |||||||| | ||| ||||||| | || || || | ||||| || || Sbjct 336465 ATTTTGGCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTGATAGTCTTA 336524 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGC 95005 || || | || || || || || ||| Sbjct 336525 CCCGTTAAGGTCTTAACGAAAATTTGC 336551 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||| ||||| | || | ||||| || | ||| ||||||||||| | ||| || || Sbjct 640265 CTCCACCTCTAAGACGTAGGACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTC-- 640322 Query 94839 TCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| ||| | || || || || |||||| ||||||| | || ||| ||||| || Sbjct 640323 TGATAAGGTTCTACCGTCTTCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGATCGGG 640382 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 ||||||||||||||||| | ||| || |||||||| Sbjct 640383 TGGAATACCTTCTTTGTCTTGAATCTTGGCCTTGAC 640418 >seq4 Length=1327562 Score = 102 bits (112), Expect = 7e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||| | | || || |||||||| | ||| ||||||||||| | | Sbjct 1257946 AAAATTTGCATACCTCCACGAAGACGTAAGACCAAGTGAAGAGTCGATTCCTTTTGGATG 1258005 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || || | || || | || ||||| | || || |||||||| Sbjct 1258006 TTGTAGTCTGACAAGGTTCTACCGTCTTCTAATTGCTTTCCTGCGAAAATCAATCTTTGT 1258065 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| || || || ||||| ||||| | |||||| || |||||| | ||| || || Sbjct 1258066 TGATCGGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTGTCGATGGTATCT 1258125 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | |||||||| ||||| || | || || |||||||| ||||| Sbjct 1258126 CCAGATTCGACTTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTGACAAAGATTTGCAT 1258184 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | || ||||||||||| | ||| |||||||||| ||| | || ||| Sbjct 1257748 ACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAAAGTTCTACCGTCTTCC 1257807 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||||| ||||||| | | ||| ||||| || ||||| || || ||||| | | Sbjct 1257808 AATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTCCTTGTCTTGA 1257867 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||||||| ||| | | ||| ||| ||||| || | || || || ||| Sbjct 1257868 ATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCGACTTCCAAAGTAATAGTCTTT 1257927 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||| || || || || ||||| Sbjct 1257928 CCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| || || ||| | ||||| ||||| || || || || ||||| ||||||||| Sbjct 1258560 TCTTCCAATTGCTTACCGGCGAAGATCAATCTCTGTTGGTCAGGTGGAATGCCTTCTTTG 1258619 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| |||||||| | | | ||||| | || || || | ||||| Sbjct 1258620 TCTTGGATTTTAGCCTTGACATTGTCAATGGTGTCTCCAGACTCTACCTCTAGAGTGATA 1258679 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| |||||||| || || ||||||||||| Sbjct 1258680 GTCTTTCCGGTAAGAGTCTTTACGAAGATCTGCAT 1258714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290846970680