Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq28 352 4e-92 >seq28 Length=226377 Score = 352 bits (390), Expect = 4e-92 Identities = 1198/1845 (65%), Gaps = 45/1845 (2%) Strand=Plus/Minus Query 61994 TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 62053 ||||||||||| | | || ||| ||| | || | | |||||| |||| || || | Sbjct 218647 TGTGAATTGAACAGCATTGGCTGCAGGTCTAGTTCTCAAATAGTAAGTTCCAGTCTTCAA 218588 Query 62054 ACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTAT 62113 ||| |||| ||||| || ||||| || |||| || | ||| | | || Sbjct 218587 ACCCTTCTTCCAACCGTAGAAGTGCATTGAAGTAAGTTGACCGAAAGTAGGAGCGGATAG 218528 Query 62114 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62173 |||||| |||| ||||||| |||| ||||| || || || || |||||||| | || Sbjct 218527 ATGGATGTTCAAAGATTGAGATTGACAAATGAAAGCACCTCTATCAGCAGCCATATCGAT 218468 Query 62174 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT-TCTGGAA 62232 ||| | ||| || ||||||||||||| ||| || || | ||| || ||| ||||||| Sbjct 218467 GATAGACTTCTGAGGAATTTCCCAAACAGTCTTGTATAAAGCCTTGAT-TCTATCTGGAA 218409 Query 62233 GGTTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 62289 || || || ||||| |||||||||| || || ||||| ||||| ||| |||| Sbjct 218408 TTCCTGGTACGTTTTGAATCGATCCACCATGAGCGATGATCCTGTTCTTCATCGATTCAT 218349 Query 62290 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62349 |||||| | ||| || |||| | | ||||| || ||||| ||||||| Sbjct 218348 CCCATAAACCTTGTTCGACCAATTCTCTCAACAACCAAGGATTGACGACTTGGAATTCTC 218289 Query 62350 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62409 ||| ||| ||||| |||| ||| || || || || ||||| | | || || | Sbjct 218288 CAGCCAAGACTCTACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAGCATTCGTTGAAAC 218229 Query 62410 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62469 |||| ||||||| ||| || ||||| ||||| || || | | | | || | |||| Sbjct 218228 CCAAGATTTGAGAAGTAGAGGCAGTTGGCATTGGAGCTAGAAGAAGAGAGTTACGTAGAC 218169 Query 62470 CGTATGTTCTG--ATTTTATCTTTTA--GAGGTTCCCAATTCCAAAGATCCGACGGTACA 62525 | ||||| || || || | || | || || ||||| ||||||||| || || Sbjct 218168 C--ATGTTTTGCCATCTTTGCCTTCAATGAAGT--CCAATCCCAAAGATCTGAAGGAGTG 218113 Query 62526 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATC 62584 || ||| || || | ||| || | || ||| | || ||| Sbjct 218112 ACACCCCACATGTCGTATTGAAGTTCTCCTTGACTTGCTGGACTTCCCT-CGTAAGTAGA 218054 Query 62585 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCT-CTAATGCACCGTAATAAATGG 62643 ||| |||||||| | ||||||| ||| | | | | | || || ||| ||| |||| Sbjct 218053 GTAAGGTCCTTCGATTTCAGCTAATTCG-ATCGAACGTTCCAAAGCGGCGTGATAGATGG 217995 Query 62644 TTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGA 62703 |||||||||| | || || | | ||||| | || || |||||| | || Sbjct 217994 TTTCGAAGATTTGGACGTTGAGCTTACGAGCTTCTGGAGAGTCGAAAGGATAACCCATGA 217935 Query 62704 GAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62763 || || || || |||| ||||||||||| || ||||| || | ||| | || | Sbjct 217934 TCATGAAAGCATCAGCTAGACCTTGAACACCGATTCCGATTGGACGATGACGGAAGTTGG 217875 Query 62764 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62823 | |||||| | ||| || || || || || || || || ||||| |||| Sbjct 217874 AACGACGAGCTTCCTCGACAGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTCCAC 217815 Query 62824 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-TCGCCCATCTAT-TACAAA 62881 ||| || ||| || ||| | |||| || || ||| ||| || | Sbjct 217814 AAATGACCTTGGAGAC---CTTGTG---GAGACGTTCGAAGTCGTAGGTCTTGGTAGCAG 217761 Query 62882 CAT--------GTTC-AAG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 62931 | | ||| ||| || | || |||| || || |||||||| |||| | | Sbjct 217760 CGTCGATGAAGGTTGGAAGAGCGATGGAAGCCAAGTTGCAGACGGCTACTTCATCCGGAG 217701 Query 62932 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 62991 | |||| || || ||||| ||||| || |||||||| ||||||| || | | Sbjct 217700 CACTGTATTCGATGATTTCAGTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCT 217641 Query 62992 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63051 | ||||||||| |||| || ||||| ||||| ||| | ||| | |||||||| | | Sbjct 217640 GGTTACTCTTTCTGTTTGCAGCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTT 217581 Query 63052 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTT 63111 ||| ||| | || || | ||| | | |||| || | | ||| ||| | || Sbjct 217580 GAGCTTCCAAGATGGCATACCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACCTT 217521 Query 63112 CTCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169 | |||||| | ||||| | | |||||| || ||||| | || | | | || Sbjct 217520 CGGATTCGTACTTGGTGTAAAGAGC--TTCGAATTCCTCTCCGTAGACGTCAGCGAGACC 217463 Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63229 || ||||| | ||||| | | ||||| || ||| | || |||| ||||| || Sbjct 217462 TGGGCATTCTCCAGGACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAA 217403 Query 63230 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289 ||| || |||||||||||||| || || ||||||| | | |||||| ||||| Sbjct 217402 GAGGTCTGGAATCCAAAGAGCGTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTG 217343 Query 63290 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 ||||| ||||| | ||| | | | || |||||||| || |||||||| ||||| Sbjct 217342 GTTCTTACGTAGATCCAAGAATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGC 217283 Query 63350 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63409 | | || || || ||||||||||| ||||| | ||||||||| ||||| || || || Sbjct 217282 AAAGGCACCTGGACGCTTGTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGAC 217223 Query 63410 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACT 63469 | | ||| |||| |||||||| || | |||||||| || | || || |||| | Sbjct 217222 ACGTAGCATGGGAACGATACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGT 217163 Query 63470 GGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527 ||||||| || | ||| ||||| ||||| ||||| | || ||||| | || Sbjct 217162 TCCACGAATGTTGTGGACGTTG--AGACCGATTCCACCTGCAGTCTTGGAGATCATGGCA 217105 Query 63528 CATCGT-TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAA 63586 || ||| || | ||||| ||||| || || ||| || || ||||| | | | || Sbjct 217104 CA-CGTCTTGAGAGTGTCGTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAA 217046 Query 63587 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63646 |||| ||||||||| | || |||||| || || || | || ||||||||||| || Sbjct 217045 ACAGGAAGACATTTGAGAATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGT 216986 Query 63647 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63706 || || || || | || || || ||||| || || || | || | ||| Sbjct 216985 GAAAGTCTTCTCGGACATGAGGTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATG 216926 Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766 ||||| | ||||||||||| | |||||| ||||| | ||| ||| ||| || || Sbjct 216925 GATTCCAATGGCGACACGCATGAGCATGTGTTGAGGACGTTCGGCGACCTTTCCATTGAT 216866 Query 63767 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 63811 | | | ||| ||| | || | ||| || ||||| || |||| Sbjct 216865 TCGTAGAAGGTAAGATCTCTCAAGAGTCTTGAAACCGAAGAAGTT 216821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946709429080