Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq23 141 9e-29 seq4 123 2e-23 seq1 120 3e-22 >seq23 Length=563827 Score = 141 bits (156), Expect = 9e-29 Identities = 327/490 (67%), Gaps = 21/490 (4%) Strand=Plus/Plus Query 119674 TAGTCTTGCCCTCAAGAGATATGTTATTCATAAACTCGAAAGGATTTGCAGTGTTGAAAT 119733 |||| || |||| | ||| ||||| | ||| || ||||||||||| | || ||| ||| Sbjct 139167 TAGTTTTACCCTGTAAAGAAATGTTCTCCATGAAATCGAAAGGATTCGTAGAGTTATAAT 139226 Query 119734 GCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACAAACTCGATGTATTCGCACA 119793 | ||||| | || | || ||| |||| ||| || || || || || |||| |||| Sbjct 139227 GTTTGTCATTACCAAGAGAGACCAAAAGTCTATCAGCAACGAATTCAATATATTGACACA 139286 Query 119794 TGGATTGCGAATTCATGCCCAACATAGCGACCGGTAAAGCATTGGTAAAGAAATCCTTTT 119853 | ||| | ||||| || | | |||| |||||||| | | |||||| ||| || Sbjct 139287 TTAATTTAGCGTTCATTCCAATGAGAGCGCAAGGTAAAGCGTCTCTCAAGAAAGCCTGTT 139346 Query 119854 CAATGTCGACCGCTTCTACAAACATACTCAACACCTTGGTCTTGGAGAGCT-TGTTCTTT 119912 |||| | || ||||| || ||| ||| ||| | ||| | ||||| | |||||| Sbjct 139347 CAATTCCAACAGCTTCAGTAATGATAGCCAAAACCGT-ATCTGGATGAGCTCTCTTCTTT 139405 Query 119913 TCGGGAATATATTTATTGTAGTATAGACAAGCAAAGTCGGTGTGTAGTCCTTCGTCTCTG 119972 | | | | | ||| |||||| || ||||| |||| ||||| ||||| Sbjct 139406 ---------AAATGAGAGAATAATAAACAAGCGAAATCGGTATGTAAACCTTCATCTCTT 139456 Query 119973 GAAATGAGTTCGTTGCTGTAAGTCAAGCCGGGTAGAGCTCCTTTTTTCGAGTCTTTGATA 120032 ||||| | |||||| ||||||| || || | ||| | ||| ||||| Sbjct 139457 GAAATCAATTCGTTAGAAAAAGTCAAACCTGGCATTAAACCTCTCTTC------TTGATC 139510 Query 120033 TAGTAGATTGCAGCAAAACTACCAGaaaaaaaGACGCCTTCGACGATAGCAAAAGCGACC 120092 || |||||| ||||||| ||||| ||||||| ||||||||| ||| ||||| || Sbjct 139511 CAGAAGATTGAAGCAAAAGATCCAGAGAAAAAGATACCTTCGACGGCAGCGAAAGCTACT 139570 Query 120093 ATGCGTTCGGCGAATGTGGCAGATTGATTT--TCGATCCATTTTTGAGCCCAAGCCGCCT 120150 | | ||| || || || || ||| | | | ||||||| || |||||| | ||| Sbjct 139571 AATCTTTCAGCAAAGGTTGC--TTTGGTGTCATTGATCCATCTTAAAGCCCATTCTCCCT 139628 Query 120151 TCTGCTTGAC 120160 | || ||||| Sbjct 139629 TTTGTTTGAC 139638 >seq4 Length=1327562 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || || || ||||| | ||||| ||||| | ||||| Sbjct 1258184 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGA 1258125 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | |||||| || ||| ||||| ||||| || || ||||||||| Sbjct 1258124 GATACCATCGACAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCCGATCAA 1258065 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGACTATA 26946 |||||| | |||| || || || ||| | ||||| | ||||| | |||| ||||| | Sbjct 1258064 CAAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCA--GACTACA 1258007 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| ||||| ||||| ||| | || ||||| | | ||| | ||||| Sbjct 1258006 ACATCCAAAAGGAATCGACTCTTCACTTGGTCTTACGTCTTCGTGGAGG 1257958 Score = 100 bits (110), Expect = 3e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| ||||||||||| | ||||| ||||| | ||||| Sbjct 1259215 ATGCAAATCTTCGTCAAAACTTTAACTGGAAAGACCATCACTCTCGAAGTGGAATCTGGT 1259156 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||||| || || ||||| || ||||| || ||| Sbjct 1259155 GACACCATCGACAACGTAAAGGCAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAA 1259096 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 26931 ||| | ||||| | | || || ||||| ||||||| ||||| Sbjct 1259095 CAACGTCTCATCTTTGCTGGAAAGCAACTGGAAGATGGTAGAA 1259053 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || || ||||| | || || | ||| | ||||| | Sbjct 1257956 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGT 1257897 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || || ||||||| ||||| || || || || || |||||| Sbjct 1257896 GATACTATTGATAACGTTAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCTGATCAA 1257837 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | | || |||||| | ||||| | ||||| | ||||| || ||| Sbjct 1257836 CAACGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGCGATTACAAC 1257777 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 |||||||| ||||| || | ||| |||| || | || | || ||||| Sbjct 1257776 ATTCAAAAGGAATCCACCCTTCATTTGGTTCTTCGTCTACGTGGTGGAAA 1257727 >seq1 Length=2409711 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 |||||| ||||||||||| || || |||||||||||| ||||||| | | ||| || Sbjct 640409 AAGATTCAAGACAAAGAAGGTATTCCACCCGATCAACAACGACTCATCTTTGCCGGAAAG 640350 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 ||||| ||||| | ||||| | | ||||| ||||||||||| ||||| ||| ||||| Sbjct 640349 CAACTAGAAGACGGTAGAACCTTATCAGACTACAACATTCAAAAGGAATCCACTCTCCAT 640290 Query 26973 CTGGTCCTGAGACTTAGAGGAGGA 26996 ||||||| | |||||||| ||| Sbjct 640289 TTGGTCCTACGTCTTAGAGGTGGA 640266 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26771 GCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGA 26830 |||| | || || || || ||||| || || | |||||| |||| | || || || Sbjct 336551 GCAAATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGA 336492 Query 26831 CACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACA 26890 ||| ||||| | ||||| || || ||||| ||||| || || || |||||||| Sbjct 336491 CACTATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACA 336432 Query 26891 AAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACAT 26950 |||| | || | | || || ||| | ||||||| |||| | | || || ||||| Sbjct 336431 AAGATTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGGATTACAACAT 336372 Query 26951 TCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||| ||||||||| | ||| |||| || Sbjct 336371 TCAAAAGGAATCTACTCTTCATTTGGTACT 336342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662023053360