Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq28 356 6e-93 >seq28 Length=226377 Score = 356 bits (394), Expect = 6e-93 Identities = 1182/1802 (66%), Gaps = 66/1802 (4%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCT-CGTATCAATGGTGATATTGTTGA 363449 ||||| | ||||| | |||| ||| ||||| ||| || |||||||| | | | || Sbjct 216827 TTCGGTTTCAAGACTCTTGAGAGATCTTACCT-TCTACGAATCAATGGAAAGGTCGCCGA 216885 Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509 ||| || || || ||| | |||||||| || ||||| |||||| | | || || || Sbjct 216886 ACGTCCTCAACACATGCTCATGCGTGTCGCCATTGGAATCCATGGAACCGACGTCGAAAA 216945 Query 363510 CGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTA--TTCACGCACGCCACGCCAACA 363567 || || || || ||||| || | || | | | ||||| ||||| | ||||| Sbjct 216946 GGCCATCGAGACTTATAACCTCAT--GTCCGAGAAGACTTTCACCCACGCTTCTCCAACT 217003 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTC-TAAAAATGAA 363626 | | ||| |||||||||| | || | || |||||||| || |||||| | | ||||| Sbjct 217004 CTCTTCAACGCTGGAACTCCTCATTCTCAAATGTCTTCCTG-TTTCTTGGTCACCATGAA 217062 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 |||||| |||||||| || |||| ||||| || |||| ||||| | || ||||||| Sbjct 217063 GGACGACTCCATCGAAGGAATCTACGACACTCTCAAGACGTGTGCCATGATCTCCAAGAC 217122 Query 363687 TGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACAGAACAG----TTACATT 363741 |||||| ||||| ||| | | || ||||||| |||||| |||| | ||||||| Sbjct 217123 TGCAGGTGGAATCGGTCTCAACG-TCCACAACATTCGTG----GAACTGGATCTTACATT 217177 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 || || |||| ||| || || | ||||||||||| ||||| | |||| ||| Sbjct 217178 GCTGGAACCAATGGATTCTCCAACGGTATCGTTCCCATGCTACGTGTCTACAACAACACT 217237 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 || || |||||||| || || ||| ||||| ||| || ||||| || || | ||| Sbjct 217238 GCTAGATACGTCGATCAAGGAGGAAACAAGCGTCCAGGTGCCTTTGCCATCTACTTGGAG 217297 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAA 363921 || ||| | || | || || || | || || || || ||| ||||| |||||| Sbjct 217298 CCATGGCATTCAGACGTCTTCGAATTCTTGGATCTACGTAAGAACCACGGAAAGGAGGAA 217357 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 | ||||| | || |||||||| || |||||| || | |||| || |||||| | || Sbjct 217358 GTTCGTGCCAGAGAACTGTTCTACGCTCTTTGGATTCCAGACCTCTTCATGAAGAGAGTA 217417 Query 363982 GAG--GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATG 364039 ||| | | | || ||||||| || |||| || ||||| |||||||| | || | Sbjct 217418 GAGAAGAACG--AGGATTGGTCTCTACTTTGTCCTGGAGAATGCCCAGGTCTCGCTGACG 217475 Query 364040 TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTA 364099 | | || || || | | ||||| ||| ||||| ||||| || || | || | Sbjct 217476 TCTACGGAGAGGAATTCGAAGCTCTTTACACCAAGTACGAATCCGAAGGTAGAGC---CA 217532 Query 364100 AGACAA---TTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAG 364156 ||| || | || || ||||| |||| ||||||| |||| | || | || || | Sbjct 217533 AGAGAACCGTCAAAGCTCAAAAGCTTTGGTATGCCATCTTGGAAGCTCAAACCGAAACTG 217592 Query 364157 GAACACCCTATATGTTGTACAAAGATTCGTGC-AACCGCAAGTCCAACCAGCAGCACCTT 364215 ||| || || ||| | ||||| || | ||| ||| | ||| |||||| || |||| Sbjct 217593 GAAATCCTTACATGCTTTACAAGGACGC-TGCAAACAGAAAGAGTAACCAGAAGAACCTA 217651 Query 364216 GGTACAATTCAGCAGAGC---AACCTATGTACCGAGATTATTGAATACACCGCTCCCGAC 364272 || || | ||| || || ||||| ||||| || || || ||||||| ||||| || Sbjct 217652 GGAACCA-TCA--AGTGCTCAAACCTTTGTACTGAAATCATCGAATACAGTGCTCCGGAT 217708 Query 364273 GAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGT--- 364329 || ||||| || ||| | || || ||||| ||||| | || | | | || | Sbjct 217709 GAAGTAGCCGTCTGCAACTTGGCTTCCATCGCTCTTCCAACCTTCATCGACGCTGCTACC 217768 Query 364330 ---ACTTTTGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCG 364384 || | ||| | | | ||| | | || || | |||| | | | || ||| Sbjct 217769 AAGACCTACGACTTCGAACGTCTCCACAAGGTCTCCAAGGTCAT--TTGTGGAAACCTCA 217826 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTC 364444 ||||| | ||||||| || || || || | ||||| ||||| || | |||| Sbjct 217827 ACAAGATCATCGACATCAACTACTACCCTGTCGAGGAAGCTCGTCGTTCCAACTTCCGTC 217886 Query 364445 ATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGG 364504 |||| || || || | ||||| || || || ||||| | ||| ||||| | | | Sbjct 217887 ATCGTCCAATCGGAATCGGTGTTCAAGGTCTAGCTGATGCTTTCATGAT-CATGGGTTAT 217945 Query 364505 CATTT-GATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTT 364563 | ||| || || || || |||||| || || | ||||| ||||| || ||| Sbjct 217946 CCTTTCGACTCTCCAGAAGCTCGTAAGCTCAACGTCCAAATCTTCGAAACCATCTATCAC 218005 Query 364564 GCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAG 364623 ||||| || |||| || || || ||| | | ||| ||||||||||| ||| Sbjct 218006 GCCGCTTTGGAACGTTCGATCGAATTAGCTGAAATCGAAGGACCTTACTCTACTTACGAG 218065 Query 364624 GG--GTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTG 364681 || |||| | || ||| || | || | || | ||| |||||| || || | Sbjct 218066 GGAAGTCCAGCAAGT--CAAGGAGAACTTCAATACGACATGTGGGGTGTCACTCCTTCAG 218123 Query 364682 TCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCC 364741 | ||| | ||| | | | | || | || |||||| || ||||| | Sbjct 218124 ATCTTTGGGATTGGACTTCATTGAAGGCAAAGATGGCAAAACATGGTCTACGTAACTCTC 218183 Query 364742 TCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCT 364801 | || ||| || ||||| || || |||||| | || ||| | || |||||| |||| Sbjct 218184 TTCTTCTAGCTCCAATGCCAACTGCCTCTACTTCTCAAATCTTGGGTTTCAACGAATGCT 218243 Query 364802 TCGAACCGTTTACA-AGCAATC-TTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 ||||||| ||||| ||| | | || || || | || | | |||||||| | || Sbjct 218244 TCGAACC--TTACACTTCAAACATCTACTCTCGTAGAGTCTTGGCTGGAGAATTCCAAGT 218301 Query 364860 AGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAA 364919 || ||| | | | | || | ||| | || | |||| ||| ||||| Sbjct 218302 CGTCAATCCTTGGTTGTTGAGAGAATTGGTCGAACAAGGTTTATGGGATGAATCGATGAA 218361 Query 364920 GAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGA-AGATC 364978 |||| |||||||| | ||| || | || ||| | |||||| ||||||| ||| Sbjct 218362 GAACAGGATCATCGCTCATGGTGGATCGATTCAAAACGTACCAGGAATTCCAGATAGA-A 218420 Query 364979 TGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAA--CTCTCATTGATATGGC 365036 | ||| || | ||||| || || ||||||||| | | ||| || |||| |||||||| Sbjct 218421 TCAAGGCTTTATACAAGACTGTTTGGGAAATT--CCTCAGAAGTCTATCATCGATATGGC 218478 Query 365037 GGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG-- 365094 || ||| | |||||||| || ||||| || || || ||| || ||| || | Sbjct 218479 TGCTGATAGAGGTGCTTTCATTTGTCAATCTCAATCTTTGAAC--ATCCATCTATCCGCT 218536 Query 365095 CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACA 365154 || || | || | ||||| || ||||| |||||||| ||||| ||| | ||||| Sbjct 218537 CCTACTTTCGGTCAACTTACTTCAATGCACTTCTACGGTTGGAAGAAGGGTTTGAAGACT 218596 Query 365155 GG 365156 || Sbjct 218597 GG 218598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352547949266