Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4 113 4e-20 seq1 95.1 1e-14 >seq4 Length=1327562 Score = 113 bits (124), Expect = 4e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || || ||||| | || || |||||||||| | Sbjct 1258184 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGA 1258125 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | |||||| || ||| ||||| ||||| || || ||||||||| Sbjct 1258124 GATACCATCGACAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCCGATCAA 1258065 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 || ||| |||||| || || |||||| | ||||| | |||| | |||| || || | Sbjct 1258064 CAAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCA--GACTACA 1258007 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| ||||| ||||| || |||| || || ||| Sbjct 1258006 ACATCCAAAAGGAATCGACTCTTCACTTGGTCTTA 1257972 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || ||||| | ||||| | |||||||| | | Sbjct 1257956 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGT 1257897 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || ||||||| ||||| || || || || || |||||| Sbjct 1257896 GATACTATTGATAACGTTAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCTGATCAA 1257837 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | || || ||| | ||||| | |||| | |||||||| ||| Sbjct 1257836 CAACGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGCGATTACAAC 1257777 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| ||||| || ||||||| || Sbjct 1257776 ATTCAAAAGGAATCCACCCTTCATTTGGT 1257748 Score = 82.4 bits (90), Expect = 7e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| ||||||||||| | || || ||||||| || | Sbjct 1259215 ATGCAAATCTTCGTCAAAACTTTAACTGGAAAGACCATCACTCTCGAAGTGGAATCTGGT 1259156 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||||| || || ||||| || ||||| || ||| Sbjct 1259155 GACACCATCGACAACGTAAAGGCAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAA 1259096 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA 24153 || | || || | | || |||||||| ||||||| |||| Sbjct 1259095 CAACGTCTCATCTTTGCTGGAAAGCAACTGGAAGATGGTAGAA 1259053 >seq1 Length=2409711 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 23993 GCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGA 24052 |||| | || || || || ||||| || || | || ||| |||| || ||| | || Sbjct 336551 GCAAATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGA 336492 Query 24053 CACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACA 24112 ||| ||||| | ||||| || || ||||| ||||| || || || |||||||| Sbjct 336491 CACTATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACA 336432 Query 24113 GAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACAT 24172 ||| | || | | || |||||| | ||||||| |||| | | ||||| ||||| Sbjct 336431 AAGATTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGGATTACAACAT 336372 Query 24173 TCAAAAAGAATCTACAATTCATTTAGT 24199 |||||| |||||||| ||||||| || Sbjct 336371 TCAAAAGGAATCTACTCTTCATTTGGT 336345 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 |||||| ||||||||||| || || ||||||||||| |||| || | | ||| ||| Sbjct 640409 AAGATTCAAGACAAAGAAGGTATTCCACCCGATCAACAACGACTCATCTTTGCCGGAAAG 640350 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||| ||||| | |||| | | || || ||||||||||| ||||| || | ||| Sbjct 640349 CAACTAGAAGACGGTAGAACCTTATCAGACTACAACATTCAAAAGGAATCCACTCTCCAT 640290 Query 24195 TTAGTGTTAAGATTGAGAGGAGGA-CTATAATGA 24227 || || || | | ||||| ||| ||| || || Sbjct 640289 TTGGTCCTACGTCTTAGAGGTGGAGCTAAAAAGA 640256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935669889765