Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 4e-13 seq1 89.7 4e-13 >seq4 Length=1327562 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || | || ||||| || ||||| | ||| || || || Sbjct 1257956 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGT 1257897 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | || || ||| ||| || || || || | || |||||| Sbjct 1257896 GATACTATTGATAACGTTAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCTGATCAA 1257837 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | ||||| | ||| || |||||||| ||||| | | ||| || |||||| ||| Sbjct 1257836 CAACGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGCGATTACAAC 1257777 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||| || || || | ||| |||| Sbjct 1257776 ATTCAAAAGGAATCCACCCTTCATTTGGT 1257748 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || | || ||||| ||||| || ||||| || || | Sbjct 1258184 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGA 1258125 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | |||| || ||| |||||| || || ||||| |||| ||||| Sbjct 1258124 GATACCATCG-ACAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCCGATCA 1258066 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | |||| || || || ||||||||||| | | |||| || | || || || Sbjct 1258065 ACAAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCAGACTACAA 1258006 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTT 115497 ||| ||||| || || ||| | || |||| || Sbjct 1258005 CATCCAAAAGGAATCGACTCTTCACTTGGTCTT 1257973 >seq1 Length=2409711 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 115288 GCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGCGA 115347 ||||||||| || || || | ||||| || || || ||| |||| ||||| | || Sbjct 336551 GCAAATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGA 336492 Query 115348 CACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGC 115406 |||| | | |||| || || ||||| || || ||||| | || ||||| | Sbjct 336491 CACTATCG-ACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAAC 336433 Query 115407 AAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAACA 115466 ||||| | || | ||| || || ||||| ||||||| | |||| | | ||||| |||| Sbjct 336432 AAAGATTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGGATTACAACA 336373 Query 115467 TTCAAAAAGAGTCTACTATACATATGGT 115494 ||||||| || |||||| | ||| |||| Sbjct 336372 TTCAAAAGGAATCTACTCTTCATTTGGT 336345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425343673415560