Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq28 343 2e-89 >seq28 Length=226377 Score = 343 bits (380), Expect = 2e-89 Identities = 1196/1845 (65%), Gaps = 45/1845 (2%) Strand=Plus/Minus Query 61849 TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 61908 ||||||||||| | | || ||| ||| | || | | |||||| |||| || || | Sbjct 218647 TGTGAATTGAACAGCATTGGCTGCAGGTCTAGTTCTCAAATAGTAAGTTCCAGTCTTCAA 218588 Query 61909 ACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTAT 61968 ||| |||| ||||| || ||||| || |||| || | ||| | | || Sbjct 218587 ACCCTTCTTCCAACCGTAGAAGTGCATTGAAGTAAGTTGACCGAAAGTAGGAGCGGATAG 218528 Query 61969 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62028 |||||| |||| ||||||| |||| ||||| || || || || |||||||| | || Sbjct 218527 ATGGATGTTCAAAGATTGAGATTGACAAATGAAAGCACCTCTATCAGCAGCCATATCGAT 218468 Query 62029 AATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT-TCTGGAA 62087 || | ||| || ||||||||||||| ||| || || | ||| || ||| ||||||| Sbjct 218467 GATAGACTTCTGAGGAATTTCCCAAACAGTCTTGTATAAAGCCTTGAT-TCTATCTGGAA 218409 Query 62088 GGTTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 62144 || || || ||||| |||||||||| || || ||||| ||||| ||| |||| Sbjct 218408 TTCCTGGTACGTTTTGAATCGATCCACCATGAGCGATGATCCTGTTCTTCATCGATTCAT 218349 Query 62145 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62204 |||||| | ||| || |||| | | ||||| || ||||| ||||||| Sbjct 218348 CCCATAAACCTTGTTCGACCAATTCTCTCAACAACCAAGGATTGACGACTTGGAATTCTC 218289 Query 62205 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 62264 ||| ||| ||||| |||| ||| || || || || ||||| | | || || | Sbjct 218288 CAGCCAAGACTCTACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAGCATTCGTTGAAAC 218229 Query 62265 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62324 |||| ||||||| ||| || ||||| ||||| || || | | | | || | |||| Sbjct 218228 CCAAGATTTGAGAAGTAGAGGCAGTTGGCATTGGAGCTAGAAGAAGAGAGTTACGTAGAC 218169 Query 62325 CGTATGTTCTG--ATTTTATCTTTTA--GAGGTTCCCAATTCCAAAGATCCGACGGTACA 62380 | ||||| || || || | || | || || ||||| ||||||||| || || Sbjct 218168 C--ATGTTTTGCCATCTTTGCCTTCAATGAAGT--CCAATCCCAAAGATCTGAAGGAGTG 218113 Query 62381 ACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATC 62439 || ||| || || | ||| || | || ||| | || ||| Sbjct 218112 ACACCCCACATGTCGTATTGAAGTTCTCCTTGACTTGCTGGACTTCCCT-CGTAAGTAGA 218054 Query 62440 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCT-CTAATGCACCGTAATAAATGG 62498 ||| |||||||| | ||||||| ||| | | | | | || || ||| ||| |||| Sbjct 218053 GTAAGGTCCTTCGATTTCAGCTAATTCG-ATCGAACGTTCCAAAGCGGCGTGATAGATGG 217995 Query 62499 TTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGA 62558 |||||||||| | || || | | ||||| | || || |||||| | || Sbjct 217994 TTTCGAAGATTTGGACGTTGAGCTTACGAGCTTCTGGAGAGTCGAAAGGATAACCCATGA 217935 Query 62559 GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62618 || || || || |||| ||||||||||| || ||||| || | ||| | || | Sbjct 217934 TCATGAAAGCATCAGCTAGACCTTGAACACCGATTCCGATTGGACGATGACGGAAGTTGG 217875 Query 62619 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62678 | |||||| | ||| || || || || || || || || ||||| |||| Sbjct 217874 AACGACGAGCTTCCTCGACAGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTCCAC 217815 Query 62679 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-TCGCCCATCTAT-TACAAA 62736 ||| || ||| || ||| | |||| || || ||| ||| || | Sbjct 217814 AAATGACCTTGGAGAC---CTTGTG---GAGACGTTCGAAGTCGTAGGTCTTGGTAGCAG 217761 Query 62737 CAT-GTTCAA---TGCAACAG------ATGCCAGATTACAAACGGCTACCTCATTAGCAT 62786 | | | | || || || || | |||| || || |||||||| |||| | | Sbjct 217760 CGTCGATGAAGGTTGGAAGAGCGATGGAAGCCAAGTTGCAGACGGCTACTTCATCCGGAG 217701 Query 62787 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 62846 | |||| || || ||||| ||||| || |||||||||||||||| || | | Sbjct 217700 CACTGTATTCGATGATTTCAGTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCT 217641 Query 62847 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 62906 | ||||||||| |||| || ||||| ||||| ||| | ||| | |||||||| | | Sbjct 217640 GGTTACTCTTTCTGTTTGCAGCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTT 217581 Query 62907 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTT 62966 ||| ||| | || || | ||| | | |||| || | | ||| ||| || Sbjct 217580 GAGCTTCCAAGATGGCATACCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACCTT 217521 Query 62967 CTCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCC 63024 | |||||| | ||||| | | |||||| || ||||| | || | | || || Sbjct 217520 CGGATTCGTACTTGGTGTAAAGAGC--TTCGAATTCCTCTCCGTAGACGTCAGCGAGACC 217463 Query 63025 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63084 || ||||| | ||||| | | ||||| || ||| | || |||| ||||| || Sbjct 217462 TGGGCATTCTCCAGGACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAA 217403 Query 63085 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 ||| || |||||||||||||| || || ||||||| | | |||||| ||||| Sbjct 217402 GAGGTCTGGAATCCAAAGAGCGTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTG 217343 Query 63145 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 ||||| ||||| | ||| | | | || |||||||| || |||||||| ||||| Sbjct 217342 GTTCTTACGTAGATCCAAGAATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGC 217283 Query 63205 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63264 | | || || || ||||||||||| ||||| | ||||||||| ||||| || || || Sbjct 217282 AAAGGCACCTGGACGCTTGTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGAC 217223 Query 63265 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACT 63324 | | ||| |||| ||||| ||||| |||||||| || | || || |||| | Sbjct 217222 ACGTAGCATGGGAACGATACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGT 217163 Query 63325 GGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63382 ||||||| || | ||| ||||| ||||| ||||| | || ||||| | || Sbjct 217162 TCCACGAATGTTGTGGACGTTG--AGACCGATTCCACCTGCAGTCTTGGAGATCATGGCA 217105 Query 63383 CATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 63441 || ||| || | || || ||||| || || || || ||| ||||| | | | || Sbjct 217104 CA-CGTCTTGAGAGTGTCGTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAA 217046 Query 63442 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGT 63501 |||| ||||||||| | || |||||| || || || | || ||||||||||| || Sbjct 217045 ACAGGAAGACATTTGAGAATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGT 216986 Query 63502 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63561 || || || || | || || || ||||| || || || | || | ||| Sbjct 216985 GAAAGTCTTCTCGGACATGAGGTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATG 216926 Query 63562 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63621 ||||| | ||||||||||| | |||||| ||||| | ||| ||| ||| || || Sbjct 216925 GATTCCAATGGCGACACGCATGAGCATGTGTTGAGGACGTTCGGCGACCTTTCCATTGAT 216866 Query 63622 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 63666 | | | ||| ||| | || | ||| || ||||| || |||| Sbjct 216865 TCGTAGAAGGTAAGATCTCTCAAGAGTCTTGAAACCGAAGAAGTT 216821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631501014800