Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4 152 4e-32 seq1 116 3e-21 seq15 113 4e-20 >seq4 Length=1327562 Score = 152 bits (168), Expect = 4e-32 Identities = 177/235 (75%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||||||||| || | || || | ||||| || || | Sbjct 1257956 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGT 1257897 Query 25059 GACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| || | || | | ||||| | ||| ||||| || || ||||||||||| | Sbjct 1257896 GATACTATTGA-TAACGTTAAGGCAAAGATTCAA-GACAAGGAGGGAATTCCACCTGATC 1257839 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || |||| ||||| || |||||||| ||||| | | | ||| || ||||||||| Sbjct 1257838 AACAACGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGCGATTACA 1257779 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 | |||||||| |||||||| || ||||| || || | ||| | || ||||| || Sbjct 1257778 ACATTCAAAAGGAATCCACCCTTCATTTGGTTCTTCGTCTACGTGGTGGAAACTA 1257724 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || ||||||| ||||||| || || Sbjct 1258184 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGA 1258125 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| |||| |||| |||| ||| ||||| ||||| || ||||| || Sbjct 1258124 GATACCATCGACAACGTCA---AAGCCAAAATTCAG-GACAAGGAAGGAATCCCACCCGA 1258069 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | ||||| || || || ||||||||||| | | | || || || || Sbjct 1258068 TCAACAAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCAGACTA 1258009 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || ||||| ||||| || || || || || || | || | ||||| Sbjct 1258008 CAACATCCAAAAGGAATCGACTCTTCACTTGGTCTTACGTCTTCGTGGAGG 1257958 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||||||| | ||||| || | ||||| | || || ||||| Sbjct 1258714 ATGCAGATCTTCGTAAAGACTCTTACCGGAAAGACTATCACTCTAGAGGTAGAGTCTGGA 1258655 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| |||||| ||||||||||| ||||||||||||| Sbjct 1258654 GACACCATTGA--CAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCTGACC 1258597 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 ||||| | | || || ||||| || ||||| ||||| Sbjct 1258596 AACAGAGATTGATCTTCGCCGGTAAGCAATTGGAAGA 1258560 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||||| || || || ||||||| |||||||||| || | Sbjct 1259215 ATGCAAATCTTCGTCAAAACTTTAACTGGAAAGACCATCACTCTCGAAGTGGAATCTGGT 1259156 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| |||| | ||| || || ||||| || || |||||||| Sbjct 1259155 GACACCATCGACAACGTAAAGGCAAAGATTCAA-GATAAGGAAGGTATCCCTCCTGACCA 1259097 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||| || | || ||||| || || ||| | ||||||| | | ||| Sbjct 1259096 ACAACGTCTCATCTTTGCTGGAAAGCAACTGGAAGATGGTAGAACT 1259051 >seq1 Length=2409711 Score = 116 bits (128), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 |||||| || || ||||| || || ||||| | ||||| |||| || ||||| ||| Sbjct 336551 GCAAATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGA 336492 Query 25061 CACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||| || || ||| |||||| ||||| ||||| |||||||| || ||| Sbjct 336491 CACTATCGA--CAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAA 336434 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || ||||| || || ||||| ||||||| | || | |||||||| Sbjct 336433 CAAAGATTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGGATTACAAC 336374 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || || ||||| || || Sbjct 336373 ATTCAAAAGGAATCTACTCTTCATTTGGTACT 336342 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| |||||||| || ||||| || | || |||||||| || ||| ||||| Sbjct 640400 GACAAAGAAGGTATTCCACCCGATCAACAACGACTCATCTTTGCCGGAAAGCAACTAGAA 640341 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || | | | || | || ||||| |||||||| |||||||| || ||||| || ||| Sbjct 640340 GACGGTAGAACCTTATCAGACTACAACATTCAAAAGGAATCCACTCTCCATTTGGTCCTA 640281 Query 25212 AGGCTAAGAGGAGGA 25226 | || ||||| ||| Sbjct 640280 CGTCTTAGAGGTGGA 640266 >seq15 Length=848729 Score = 113 bits (124), Expect = 4e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 || |||||| || || ||||| ||||||||||| | ||||| | || || || || Sbjct 551984 AAGGCAAATTTTCGTCAAGACCTTGACCGGTAAGACGATCACCCTAGAGGTCGAATCCGG 552043 Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| || || || || ||| || ||| ||||| ||||| || || || ||| Sbjct 552044 TGACACCATTGA--CAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGAC 552101 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || ||||| || ||||| || ||||| | | | ||| || |||||||| Sbjct 552102 CAACAAAGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTAGAACTCTGAGCGATTAC 552161 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || |||||||| || || || || || Sbjct 552162 AATATCCAGAAGGAATCCACTCTGCACTTGGTCCT 552196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327667285345