Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq23 158 1e-33 >seq23 Length=563827 Score = 158 bits (174), Expect = 1e-33 Identities = 339/500 (68%), Gaps = 14/500 (3%) Strand=Plus/Plus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 ||| | ||||||||| || ||||| || || ||| |||| || | | |||||||| | Sbjct 139249 CAAAAGTCTATCAGCAACGAATTCAATATATTGACACATTAATTTAGCGTTCATTCCAAT 139308 Query 92977 AAGA-CGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 ||| || | ||||| |||||| |||||||| | | || ||| |||| ||||| | | Sbjct 139309 GAGAGCGCA-AGGTAAAGCGTCTCTCAAGAAAGCCTGTTCAATTCCAACAGCTTCAGTAA 139367 Query 93036 AGATTTCTATTACTCTACTATTTGG-TGGTTTTTGTACG--ACATAATTGTACATTAAGC 93092 ||| | | || || | ||| || | | | | | || | | | | ||| | Sbjct 139368 TGATAGCCAAAACCGTA---TCTGGATGAGCTCTCTTCTTTAAATGAGAGAATAATAAAC 139424 Query 93093 ACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAAC 93152 | || || ||||||||||||||||| |||| ||| ||||| || || || || |||| Sbjct 139425 AAGCGAAATCGGTATGTAAACCTTCATCTCTTGAAATCAATTCGTTAGAAAAAGTCAAAC 139484 Query 93153 CTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTA 93212 |||| | | |||| ||||||| ||| || |||||||||||| ||||| ||||| | Sbjct 139485 CTGGCATTAAACCTCTCTTCTTGATCCAGAAGATTGAAGCAAAAGATCCAGAGAAAAAGA 139544 Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC---GGAATTACTGC 93269 ||||||| ||||| || || || || | | ||| ||||| |||| || | | Sbjct 139545 TACCTTCGACGGCAGCGAAAGCTACTAATCTTTCAGCAAAGGTTGCTTTGGTGTCA---T 139601 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 |||||||| |||||||||| || | |||| || | || | || || | || | Sbjct 139602 TGATCCATCTTAAAGCCCATTCTCCCTTTTGTTTGACGACTGGAATCGTCTCTAAGGCAT 139661 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 ||| ||| || || | || | ||| || ||||| || ||||| | ||||| || Sbjct 139662 CAAAGAGGAAAGTACGTTGATCTGGATCACGAATGTAGGTGTCGATGAGTAGAGAGTAGG 139721 Query 93390 TTTCAGAATGGACATTCTCC 93409 |||| || |||| || ||| Sbjct 139722 TTTCGGAGTGGATGTTTTCC 139741 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 93416 ATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCT 93475 || ||||| || |||||||| | ||| || | || ||||| | || | || Sbjct 139979 ATCTGGAACCCATAGAAACAACGAGCCTCTGCAGCTTGAACTTCACCACTGAAACGTTCC 140038 Query 93476 ACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATA 93535 | || ||||||||||| || ||||| || || ||||| || ||||| | || ||| Sbjct 140039 AAAAGGTTTTCATTGACGATTCCATCCGAAGCGGCAAAGAAGGCCAAGACGTGAGAGATA 140098 Query 93536 AAATGTTTCTCATCATCTTTAAGCTTAT---CCCAATCGGATAGATCTTTTGAAAGATCG 93592 || || |||| || || | ||| | |||||||| | ||||| || ||||| Sbjct 140099 AAGTGACGTTCATTGTCATTCAACTTGTTGTCCCAATCGTGCATGTCTTTGGAGAGATCA 140158 Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 | || || ||||||| || |||||||||||||| |||||||| | ||| || Sbjct 140159 ATCTCCTCTGCAGTCCAGAATGATGCTTCTGCTTTCTTGTACATTTGCCAGAT 140211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860361472120