Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4 149 5e-31 seq1 122 7e-23 seq15 104 2e-17 seq23 87.8 2e-12 >seq4 Length=1327562 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||||| ||||| || || | ||| | ||||| ||| | | Sbjct 1257956 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGT 1257897 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | || ||| ||||||||||||||||| |||||||| |||||| Sbjct 1257896 GATACTATTGATAACGTTAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCTGATCAA 1257837 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || ||||| || || || | || | |||||||||| Sbjct 1257836 CAACGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGCGATTACAAC 1257777 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||||| ||||||||| | ||||| ||| Sbjct 1257776 ATTCAAAAGGAATCCACCCTTCATTTGGTT 1257747 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || || || ||||||| ||||| ||| | Sbjct 1258184 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGA 1258125 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | ||||| |||||||| |||||||| || || |||||||||||| Sbjct 1258124 GATACCATCGACAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCCGATCAA 1258065 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || || || ||||| || | ||| | || || |||||| Sbjct 1258064 CAAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCAGACTACAAC 1258005 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| || | || || || || || | || |||||| Sbjct 1258004 ATCCAAAAGGAATCGACTCTTCACTTGGTCTTACGTCTTCGTGGAGGT 1257957 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| || || ||||||||||| || || || ||||||| ||||||||| | Sbjct 1259217 AGATGCAAATCTTCGTCAAAACTTTAACTGGAAAGACCATCACTCTCGAAGTGGAATCTG 1259158 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | ||| | | || ||| |||||||| ||||| ||||| || || || | Sbjct 1259157 GTGACACCATCGACAACGTAAAGGCAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACC 1259098 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 |||||||||| || ||||| || || || | || ||| | || | || || |||| Sbjct 1259097 AACAACGTCTCATCTTTGCTGGAAAGCAACTGGAAGATGGTAGAACTCTTTCAGACTACA 1259038 Query 22397 ACATTCA 22403 |||| || Sbjct 1259037 ACATCCA 1259031 >seq1 Length=2409711 Score = 122 bits (134), Expect = 7e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 ||||||||| ||||| || ||||| ||||| || |||| || || || || | || Sbjct 336551 GCAAATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGA 336492 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 || | ||| || |||| ||||| ||||||||||| || |||||||| |||||||| Sbjct 336491 CACTATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACA 336432 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 | | | || ||||| || || || || || ||| | ||| | || ||||||||||| Sbjct 336431 AAGATTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGGATTACAACAT 336372 Query 22401 TCAAAAAGAATCCACCATACATTTAGT 22427 |||||| ||||| || | ||||| || Sbjct 336371 TCAAAAGGAATCTACTCTTCATTTGGT 336345 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||||||||| || ||||||||||||||||||||||| || || |||||||| || Sbjct 640409 AAGATTCAAGACAAAGAAGGTATTCCACCCGATCAACAACGACTCATCTTTGCCGGAAAG 640350 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || |||| || | ||| | || || |||||||||||||| |||||||| | ||| Sbjct 640349 CAACTAGAAGACGGTAGAACCTTATCAGACTACAACATTCAAAAGGAATCCACTCTCCAT 640290 Query 22423 TTAGT 22427 || || Sbjct 640289 TTGGT 640285 Score = 100 bits (110), Expect = 2e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 22295 TCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTG 22354 ||||| ||||| ||||||||||| || || ||||| |||||||||||||| || |||| Sbjct 640892 TCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCGGATCAACAACGTCTAATCTTTG 640833 Query 22355 CCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCA 22414 | || || || || |||||| | || | || ||||||||||| || |||||||| | Sbjct 640832 CTGGAAAGCAATTGGAGGATGGTAGGACTCTGTCTGATTACAACATCCAGAAAGAATCAA 640773 Query 22415 CCATACATTTAGT 22427 || | || || || Sbjct 640772 CCCTGCACTTGGT 640760 >seq15 Length=848729 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 ||||||||| || || || || |||||||| ||| |||| || || || ||| || || Sbjct 551987 GCAAATTTTCGTCAAGACCTTGACCGGTAAGACGATCACCCTAGAGGTCGAATCCGGTGA 552046 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 ||| | ||| || |||| || || ||||||||||| || || || ||||| ||||| Sbjct 552047 CACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGACCAACA 552106 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 | | | || ||||| || |||||||| || || | || | ||||||||| || Sbjct 552107 AAGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTAGAACTCTGAGCGATTACAATAT 552166 Query 22401 TCAAAAAGAATCCAC 22415 || || |||||||| Sbjct 552167 CCAGAAGGAATCCAC 552181 >seq23 Length=563827 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 117069 GCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATATTTTTTATC 117128 |||||||| |||||||| || || || || || ||||||| | || || | ||| Sbjct 139566 GCTTTCGCTGCCGTCGAAGGTATCTTTTTCTCTGGATCTTTTGCTTCAATCTTCTGGATC 139507 Query 117129 AAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGACGAA 117188 |||| | |||| ||||||| ||| | || ||| |||||||| || || | || ||| Sbjct 139506 AAGAAGAGAGGTTTAATGCCAGGTTTGACTTTTTCTAACGAATTGATTTCAAGAGATGAA 139447 Query 117189 GGTTTACACACCGATTTTGCGTG 117211 |||||||| |||||||| || || Sbjct 139446 GGTTTACATACCGATTTCGCTTG 139424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727677727595