Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq28 86.0 1e-11 seq8 86.0 1e-11 >seq28 Length=226377 Score = 86.0 bits (94), Expect = 1e-11 Identities = 280/430 (65%), Gaps = 10/430 (2%) Strand=Plus/Minus Query 294094 CCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAGACAGG 294153 || || || || |||||||||||||| ||||| |||||| || || || |||| || Sbjct 217524 CCTTCGGATTCGTACTTGGTGTAAAGAGCTTCGAATTCCTCTCCGTAGACGTCAGCGAGA 217465 Query 294154 CCAGGGCACTCGTGAGGGTCAAGTAGAGACCACTGGGCATCAGTCTCCACGCGCTTCATG 294213 || ||||| || ||| |||||||||||| | | | |||| || | ||||||| Sbjct 217464 CCTGGGCATTCTCCAGGACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATG 217405 Query 294214 AATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGCAGGCTCTCCTCACCT 294273 || || || | ||| | ||||| |||| | | ||| || | ||||| || Sbjct 217404 AAGAGGTCTGGAATCCAAAGAGCGTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCG 217345 Query 294274 TGATTACGACGGAGGAGCAGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGATACACA 294333 || || ||| || || ||| || | || ||| | ||| || |||| || | Sbjct 217344 TGGTTCTTACGTAGATCCAAGAATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATG 217285 Query 294334 GCAAAGGACCCCT----TCCTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGT--CA 294387 ||||||| | ||| | || ||| || || | | |||| || ||| ||| | Sbjct 217284 GCAAAGG-CACCTGGACGCTTGTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTA 217226 Query 294388 AACACCTTCAGCATAGGCACGATGCCATCGGACTCACCATTGGTTCCGCGAATCTCAGCC 294447 |||| | ||||| || ||||| || | ||| ||||||||||| ||| | || Sbjct 217225 GACACGT--AGCATGGGAACGATACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGAT 217168 Query 294448 CCGCGCCCGCGAATGTCGCTCATGTGGAGACCAATGCCACCGCCATACTTGGACAACTGG 294507 || || ||||||| | | || |||||| || ||||| || |||||| | | | Sbjct 217167 CCAGTTCCACGAATGTTGTGGACGTTGAGACCGATTCCACCTGCAGTCTTGGAGATCATG 217108 Query 294508 GCA-ACGTCT 294516 ||| |||||| Sbjct 217107 GCACACGTCT 217098 >seq8 Length=1256818 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 280251 GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATC 280310 || ||||||||||| ||| || | | |||||||||||| ||||||||||||||||| Sbjct 1192479 GTCTGGAAGCATCCAAACTTGGTCGTCGGTTACGTCGCTCAACACGCTTTCCACCACATT 1192420 Query 280311 GAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 || ||||| || |||| ||||||| | ||||| | ||||| || Sbjct 1192419 GATAACCATCTAGACAAGACTCCTTTGGATTACATGCTTTGGCGTTA 1192373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835970342983