Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4 194 3e-44 seq15 163 5e-35 seq1 159 6e-34 seq6 104 4e-17 >seq4 Length=1327562 Score = 194 bits (214), Expect = 3e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || || |||||||| || || || || ||||||||||| || || || Sbjct 1257958 CCTCCACGAAGACGTAAGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCTGAC 1258017 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || || || |||||||| ||||| || ||||| || | ||||||||| |||||||| Sbjct 1258018 AAGGTTCTACCGTCTTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGGGTGGG 1258077 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| ||||| || || |||||| |||||||| ||| | ||||| ||| Sbjct 1258078 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTGTCGATGGTATCTCCAGATTCGACT 1258137 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| ||||| || | ||||||||| || || ||||| Sbjct 1258138 TCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTGACAAAGATTTGCAT 1258184 Score = 163 bits (180), Expect = 5e-35 Identities = 147/185 (79%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 68277 TGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGT 68336 |||||||| || || ||||| || || || ||||| || ||||| |||||||| || | | Sbjct 1258530 TGGATGTTGTAGTCTGAGAGGGTTCTTCCGTCTTCCAATTGCTTACCGGCGAAGATCAAT 1258589 Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || |||||||| |||||||||||||| |||||||| || || |||||||| || ||| Sbjct 1258590 CTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTGTCAATG 1258649 Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456 |||||| | || ||||| || | ||||| || ||||| || || ||||| ||||| ||| Sbjct 1258650 GTGTCTCCAGACTCTACCTCTAGAGTGATAGTCTTTCCGGTAAGAGTCTTTACGAAGATC 1258709 Query 68457 TGCAT 68461 ||||| Sbjct 1258710 TGCAT 1258714 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || ||||| || || || || | ||||| || || ||||| || ||||| ||||| ||| Sbjct 1257724 TAGTTTCCACCACGTAGACGAAGAACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAA 1257783 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 ||| | || || || ||||| || || || || || || || || | |||||| || Sbjct 1257784 TCGCTCAAAGTTCTACCGTCTTCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCA 1257843 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 |||||||| || ||||||||||||||||||||||| ||| || || || || ||| Sbjct 1257844 GGTGGAATTCCCTCCTTGTCTTGAATCTTTGCCTTAACGTTATCAATAGTATCACTAGAT 1257903 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| || || || ||||| || | ||||||||||| || ||||| Sbjct 1257904 TCGACTTCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 Score = 154 bits (170), Expect = 3e-32 Identities = 145/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 68277 TGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGT 68336 |||||||| || || || || || || |||||||| | ||||| || || || ||||| Sbjct 1259031 TGGATGTTGTAGTCTGAAAGAGTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAGA 1259090 Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 | ||||||||| || || || |||||||| ||||||||||||||||| ||| |||||| Sbjct 1259091 CGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTGCCTTTACGTTGTCGATG 1259150 Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456 ||||| | ||||| ||||| | |||||||| ||||| || | || |||||||| || Sbjct 1259151 GTGTCACCAGATTCCACTTCGAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAGATT 1259210 Query 68457 TGCAT 68461 ||||| Sbjct 1259211 TGCAT 1259215 >seq15 Length=848729 Score = 163 bits (180), Expect = 5e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || || ||||| || |||||| || || || || ||||| Sbjct 552193 ACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCTTCC 552134 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 ||||| || || || || || | ||||||||||||||| || || |||||||||||||| Sbjct 552133 AACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGG 552074 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||||| || |||||||| | ||||| || || | |||||| || || Sbjct 552073 ATCTTGGCCTTGACATTGTCAATGGTGTCACCGGATTCGACCTCTAGGGTGATCGTCTTA 552014 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | |||||||||||| || ||| || Sbjct 552013 CCGGTCAAGGTCTTGACGAAAATTTGCCTT 551984 >seq1 Length=2409711 Score = 159 bits (176), Expect = 6e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 |||||| || || || || || ||||| ||||| ||||| || || || || |||||||| Sbjct 336344 TACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCATCTTC 336403 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 || ||||| || || || || | ||||||||| || |||||||| |||||||||||||| Sbjct 336404 CAATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTG 336463 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 || || |||||||| ||||| ||||| | || || || || | |||||| || || Sbjct 336464 GATTTTGGCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTGATAGTCTT 336523 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGC 68459 ||||| | |||||| ||||| || ||| Sbjct 336524 ACCCGTTAAGGTCTTAACGAAAATTTGC 336551 Score = 132 bits (146), Expect = 9e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285 |||| | ||| || | ||| || | ||||| || || ||||| || ||||| ||||| Sbjct 640258 TTTTTAGCTCCACCTCTAAGACGTAGGACCAAATGGAGAGTGGATTCCTTTTGAATGTTG 640317 Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || | || || || ||||||| ||||| ||||| || ||||||| |||||| Sbjct 640318 TAGTCTGATAAGGTTCTACCGTCTTCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGA 640377 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 ||||||||||| ||||| |||||||||||||| |||||||| Sbjct 640378 TCGGGTGGAATACCTTCTTTGTCTTGAATCTTGGCCTTGAC 640418 Score = 125 bits (138), Expect = 1e-23 Identities = 120/154 (78%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | ||||||||| || || || ||||| |||||||| ||||| | Sbjct 640740 TTCCACCACGTAGACGTAGTACCAAGTGCAGGGTTGATTCTTTCTGGATGTTGTAATCAG 640799 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || ||||| ||||| || || ||||| || || || || || | |||||| || |||| Sbjct 640800 ACAGAGTCCTACCATCCTCCAATTGCTTTCCAGCAAAGATTAGACGTTGTTGATCCGGTG 640859 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 | || |||||||||||||| || || || ||||| Sbjct 640860 GGATTCCTTCCTTGTCTTGGATTTTGGCTTTGAC 640893 >seq6 Length=1288008 Score = 104 bits (114), Expect = 4e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||||| ||| || || ||||| || | | ||| || ||||| ||||| |||||| Sbjct 395286 CCGTCTTCTAGCTGTTTACCTGCGAAGATAATACGTTGCTGATCGGGAGGAATTCCTTCC 395345 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || ||||||||||| || |||||| ||||| ||||| |||| |||||||||||| Sbjct 395346 TTATCTTGAATCTTGGCTTTGACGTTGTCGATCGTGTCACCTGAGAAAACTTCCAAGGTG 395405 Query 68424 ATGGT 68428 ||||| Sbjct 395406 ATGGT 395410 Score = 100 bits (110), Expect = 5e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| || ||||| || || || | || | ||||| || || ||| Sbjct 105916 AGGGTTCTTCCATCTTCCAATTGCTTTCCTGCAAAAACAAGACGTTGTTTCTCTGGAGGA 105975 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| |||||||||||||| |||| | ||||| |||||| | || || || Sbjct 105976 ATGCCTTCTTTGTCTTGAATCTTGCATTTGATGTAGTCGATAGTGTCTCCAGAGGCTGCT 106035 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| || |||| || | |||||||||||| Sbjct 106036 TCCAAGGTAATCACCTTTCGTGTCAAGGTCTTGACGAA 106073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621674222360