Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4 150 4e-31 seq15 109 1e-18 seq28 84.2 5e-11 >seq4 Length=1327562 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || | ||||| ||| ||| ||||| || || || ||| Sbjct 1257729 TCCACCACGTAGACGAAGAACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCT 1257788 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || | |||||||| ||||||||||| || ||||| ||||| |||||| | ||| Sbjct 1257789 CAAAGTTCTACCGTCTTCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGG 1257848 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||| || || || || || || || || ||||| || |||| ||| || ||||| || Sbjct 1257849 AATTCCCTCCTTGTCTTGAATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCGAC 1257908 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || || ||||| ||||||| |||||||||||| || ||||| Sbjct 1257909 TTCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || ||||| | | || | |||||||||||||| ||||||||||| Sbjct 1257993 TTCCTTTTGGATGTTGTAGTCTGACAAGGTTCTACCGTCTTCTAATTGCTTTCCTGCGAA 1258052 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| | |||||| |||||||||||| || ||||| ||||| ||||| ||||| Sbjct 1258053 AATCAATCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTT 1258112 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| | ||||| |||||||| ||||| ||||| || |||| |||||||| Sbjct 1258113 GTCGATGGTATCTCCAGATTCGACTTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTGAC 1258172 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 1258173 AAAGATTTGCAT 1258184 >seq15 Length=848729 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || |||||||| || ||| || || | |||||||| || ||||| || || || Sbjct 552176 TTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCTTCCAACTGTTTACCAGCAAA 552117 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||||| ||||||||||| || || ||||| || || || || || Sbjct 552116 GATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 552057 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || | ||||| || || || ||||||||||| ||||||| |||||||| Sbjct 552056 GTCAATGGTGTCACCGGATTCGACCTCTAGGGTGATCGTCTTACCGGTCAAGGTCTTGAC 551997 Query 288462 GAATATCTGCATT 288474 ||| || ||| || Sbjct 551996 GAAAATTTGCCTT 551984 >seq28 Length=226377 Score = 84.2 bits (92), Expect = 5e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 348347 CGCCCCATCGGTGTGGGAGTTCAAGGACTTCAGGATGTATTCTTCAAACTGAGATTTTCT 348406 || || ||||| | || |||||||| || |||| ||| | | || | | | || Sbjct 217889 CGTCCAATCGGAATCGGTGTTCAAGGTCTAGCTGATGCTTTCATGATCATGGGTTATCCT 217948 Query 348407 TACGACTCACCGGAAGCCAGGGACCTCAACCGCGAAATCTTCGAACATATTTACTATGCC 348466 | |||||| || ||||| | | |||||| | ||||||||||| || || | ||| Sbjct 217949 TTCGACTCTCCAGAAGCTCGTAAGCTCAACGTCCAAATCTTCGAAACCATCTATCACGCC 218008 Query 348467 GCTGTAGAAGCATCGGTAGAACTCGCTGAGATCCATGGTCCTTATCCAACATTCGAAGGG 348526 ||| | ||| ||| | ||| | ||||| ||| | || ||||| | || | ||| || Sbjct 218009 GCTTTGGAACGTTCGATCGAATTAGCTGAAATCGAAGGACCTTACTCTACTTACGAGGGA 218068 Query 348527 TCTCCCGCGAGCAAAGGCATTCTTCAGTACCACTTGTGGGATGTCACTCCT 348577 ||| || || |||| ||||| ||| || |||||| |||||||||| Sbjct 218069 AGTCCAGCAAGTCAAGGAGAACTTCAATACGACATGTGGGGTGTCACTCCT 218119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653447797714