Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4 114 1e-20 seq15 100 3e-16 seq1 96.9 3e-15 >seq4 Length=1327562 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || ||||| ||||||||||||||||| | || | |||| Sbjct 1257744 AAGAACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAAAGTTCTACCGTC 1257803 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || || ||| | || || || || || || || |||||||| || || || Sbjct 1257804 TTCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTCCTTGTC 1257863 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || ||| ||| || || | ||||||| | || ||||| | ||| | || Sbjct 1257864 TTGAATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCGACTTCCAAAGTAATAGT 1257923 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||||||||| || |||||||||||||| Sbjct 1257924 CTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 >seq15 Length=848729 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || || |||||||| | || | ||||||| | ||| || || Sbjct 552181 GTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCTTCCAACTGTTTACCA 552122 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | | || ||||||||||| |||||||| || ||||| || || ||| Sbjct 552121 GCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTG 552062 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || ||||||| || || |||| || | ||||| |||||||| || Sbjct 552061 ACATTGTCAATGGTGTCACCGGATTCGACCTCTAGGGTGATCGTCTTACCGGTCAAGGTC 552002 Query 64427 TTTACGAAAATTTGCATTTTAATAA 64451 || |||||||||||| ||| || || Sbjct 552001 TTGACGAAAATTTGCCTTTGAAGAA 551977 >seq1 Length=2409711 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || ||||| ||||||||||||||||| | | ||| | | || Sbjct 336341 AAGTACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCATC 336400 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||| || ||| | || | | || || || || ||||||||||| || || Sbjct 336401 TTCCAATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTC 336460 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||| ||| ||| || | || ||||| | || || || | || | || Sbjct 336461 TTGGATTTTGGCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTGATAGT 336520 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGC 64441 ||| || || || || || |||||||||||| Sbjct 336521 CTTACCCGTTAAGGTCTTAACGAAAATTTGC 336551 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| |||||||||||||| |||| | ||| | ||||||| || ||||| ||| Sbjct 640297 GTGGATTCCTTTTGAATGTTGTAGTCTGATAAGGTTCTACCGTCTTCTAGTTGCTTTCCG 640356 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | ||||| || || || ||||| ||||| |||||||| ||||| || || Sbjct 640357 GCAAAGATGAGTCGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTGAATCTT 640409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644406529720