Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 4e-14 seq28 89.7 5e-13 >seq4 Length=1327562 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | | | || ||||||||||||||||| |||||| Sbjct 1257730 CCACCACGTAGACGAAGAACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTC 1257789 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||| || | |||||| || | | |||| ||||| ||||| || || || Sbjct 1257790 AAAGTTCTACCGTCTTCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGA 1257849 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| | |||| |||| | || | || || | || || || Sbjct 1257850 ATTCCCTCCTTGTC-TTGAATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCGAC 1257908 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| ||| || || ||||| ||||| Sbjct 1257909 TTCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 >seq28 Length=226377 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 154247 GTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGG 154306 |||||| || |||||| ||||| | | || ||||||||| ||| ||||||| | Sbjct 217087 GTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAAACAGGAAGACATTTGAG- 217029 Query 154307 AATGCGC-GTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTT-TGGCTC 154364 |||| | ||||| || ||||| || ||| ||||| || || ||| || | | | Sbjct 217028 AATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGTGAA-AGTCTTCTCGGAC 216970 Query 154365 ATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACG 154424 || | | || || |||||||| | ||||| || || || || || | ||||| Sbjct 216969 ATGAGGTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATGGATTCCAATGGCGACA 216910 Query 154425 CGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 |||||||||||||| || |||||||||||||| Sbjct 216909 CGCATGAGCATGTGTTGAGGACGTTCGGCGAC 216878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262009193360