Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq4 154 1e-32 seq15 113 3e-20 seq1 111 1e-19 >seq4 Length=1327562 Score = 154 bits (170), Expect = 1e-32 Identities = 163/212 (77%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||||||||| || || ||||| |||||||||||||| | | |||| ||||||| Sbjct 1257747 AACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAAAGTTCTACCGTCTTC 1257806 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||||| ||||| | || | ||| ||||| || ||||||||| |||||||| Sbjct 1257807 CAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTCCTTGTCTTG 1257866 Query 15087 AAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||| ||||| || || | || |||||||| ||| ||| || || || ||||| || | Sbjct 1257867 AATCTTTGC-CTTAACGTTATCAATAGTATCACTAGATTCGACTTCCAAAGTAATAGTCT 1257925 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || |||| ||| || || |||||||||||| Sbjct 1257926 TTCCGGTCAAAGTCTTGACGAAAATTTGCATA 1257957 Score = 132 bits (146), Expect = 3e-26 Identities = 160/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCG 15021 ||| || || ||||| || || || ||||| |||||||| || ||| || |||| || Sbjct 1257972 TAAGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTC--TGACAAGGTTCTACCG 1258029 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||||||||| || || ||| | ||||| | ||||| ||| ||| |||||||||||| Sbjct 1258030 TCTTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGGGTGGGATTCCTTCCTTG 1258089 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||||||| ||| || | || || ||||| | | ||| || || | || ||| Sbjct 1258090 TCCTGAATTTTGGCTTTGACGTTGTCGATGGTATCTCCAGATTCGACTTCGAGAGTGATG 1258149 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||||| || || ||||| ||||||||| Sbjct 1258150 GTCTTTCCTGTCAAGGTCTTGACAAAGATTTGCATA 1258185 >seq15 Length=848729 Score = 113 bits (124), Expect = 3e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || || || || || || || ||||||||||| ||| |||| ||||||| Sbjct 552193 ACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCTTCC 552134 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || ||||| ||||| | ||||| | ||||||||| || |||||||||||||| Sbjct 552133 AACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGG 552074 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | || || || || | ||| || |||| ||| || || ||| Sbjct 552073 ATCTTGGCCTTGACATTGTCAATGGTGTCACCGGATTCGACCTCTAGGGTGATCGTCTTA 552014 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGC 15174 || |||| || || || ||||||||| Sbjct 552013 CCGGTCAAGGTCTTGACGAAAATTTGC 551987 >seq1 Length=2409711 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| ||||| || ||||| ||||||||||| || |||| | ||||| Sbjct 336345 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCATCTTCC 336404 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 ||||| || ||||| | || || | ||||| || |||||||||||||||||| Sbjct 336405 AATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGG 336464 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| || ||| | || ||||| || | | || || || | ||| || || ||| Sbjct 336465 ATTTTGGCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTGATAGTCTTA 336524 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATAT 15178 || || | || || || ||||||||| ||| Sbjct 336525 CCCGTTAAGGTCTTAACGAAAATTTGCCTAT 336555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391725589955