Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 1e-14 seq15 93.3 4e-14 >seq4 Length=1327562 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| || | |||||||| | || || || |||||||| |||||||||| Sbjct 1257729 TCCACCACGTAGACGAAGAACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCT 1257788 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || | | || || | ||||||||||| |||| | || || ||||| || || Sbjct 1257789 CAAAGTTCTACCGTCTTCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGG 1257848 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||||| | ||| | | || ||| | | || | || || || |||| Sbjct 1257849 AATTCCCTCCTTGT-CTTGAATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCGA 1257907 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || || ||||||| ||| || || ||||| ||||| Sbjct 1257908 CTTCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 >seq15 Length=848729 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || || || || ||||||||||||| || || | | || || Sbjct 552193 ACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCTTCC 552134 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | |||||| ||||| ||||||||| || || |||||||| || || |||||||| | Sbjct 552133 AACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGG 552074 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGT--CCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || || ||||| | || | ||||| ||| | ||||| || | ||| | ||| | Sbjct 552073 ATCTTGGCCTTGACATTGTCAATGGTGTCACCGGA--TTCGACCTCTAGGGTGATCGTCT 552016 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGC 127111 | ||||||| || || || ||||| ||| Sbjct 552015 TACCGGTCAAGGTCTTGACGAAAATTTGC 551987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500425543120