Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01]
63 sequences; 27,756,302 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq4 120 3e-22
seq28 109 5e-19
seq1 95.1 1e-14
>seq4
Length=1327562
Score = 120 bits (132), Expect = 3e-22
Identities = 169/233 (73%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| || || | || || | || || || |||||||||||||| || || |
Sbjct 1257955 ATACCTCCACGAAGACGTAAGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGT-- 1258012
Query 45171 CTGAC--GGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
||||| |||| || || || ||||| ||||||||| | ||||||| ||| || || |
Sbjct 1258013 CTGACAAGGTTCTACCGTCTTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGG 1258072
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287
| || || ||||| || || |||||||| ||||| || | || | ||| || |||
Sbjct 1258073 GTGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGA-CGTTGTCGATGGTATCTCCAGAT 1258131
Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||||||||||| | || || || || | || || ||||| ||||||||
Sbjct 1258132 TCGACTTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTGACAAAGATTTGCAT 1258184
Score = 111 bits (122), Expect = 1e-19
Identities = 149/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196
||| || || ||||||||||| || || |||||||| | ||| || || ||||||||
Sbjct 1257753 ATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAAAGTTCTACCGTCTTCCAATTG 1257812
Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256
|||||| || | || | ||||| || || || ||||| || || || ||||||| | |
Sbjct 1257813 TTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTCCTTGTCTTGAA-TCT 1257871
Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315
||| | | || | || | || || ||| |||||||| | ||||| || || ||||
Sbjct 1257872 TTGCCTTAACGTTATCAATAGTATCACTAGATTCGACTTCCAAAGTAATAGTCTTTCCGG 1257931
Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340
| | ||| || || |||||||||||
Sbjct 1257932 TCAAAGTCTTGACGAAAATTTGCAT 1257956
Score = 100 bits (110), Expect = 3e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245
|| |||||||| || || ||| | ||||||| || ||||| || ||||||||||||||
Sbjct 1258560 TCTTCCAATTGCTTACCGGCGAAGATCAATCTCTGTTGGTCAGGTGGAATGCCTTCTTTG 1258619
Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305
||||| ||||| |||| || | |||||| |||||| || || ||||| |
Sbjct 1258620 TCTTGGATTTTAGCCTTGACATTGTCAATGGTGTCTCCAGACTCTACCTCTAGAGTGATA 1258679
Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| ||||| ||||| || || |||||
Sbjct 1258680 GTCTTTCCGGTAAGAGTCTTTACGAAGATCTGCAT 1258714
Score = 95.1 bits (104), Expect = 1e-14
Identities = 122/166 (73%), Gaps = 2/166 (1%)
Strand=Plus/Plus
Query 45177 GTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATG 45236
||| || ||| |||| ||| ||||| || | || | ||||| ||||| || || ||
Sbjct 1259052 GTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATA 1259111
Query 45237 CCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTC 45295
||||| ||||||||||| ||| || | || | || | |||||| ||| || |||||
Sbjct 1259112 CCTTCCTTATCTTGAATCTTTGCCTTTA-CGTTGTCGATGGTGTCACCAGATTCCACTTC 1259170
Query 45296 GAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|||||| | || || || |||| |||||| || || |||||||||
Sbjct 1259171 GAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAGATTTGCATC 1259216
>seq28
Length=226377
Score = 109 bits (120), Expect = 5e-19
Identities = 558/881 (63%), Gaps = 19/881 (2%)
Strand=Plus/Plus
Query 122888 AATCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGT 122947
|||| | | |||||||||||||||| |||||| ||||||||||| ||||| || || |
Sbjct 216865 AATCAATGGAAAGGTCGCCGAACGTCCTCAACACATGCTCATGCGTGTCGCCATTGGAAT 216924
Query 122948 GCACGGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTT 123007
|| ||| |||| ||||||| || | ||| ||||| | | ||||| | || |||
Sbjct 216925 CCATGGAACCGACGTCGAAAAGGCCATCGAGACTTATAACCTCATGTCCGAGAAGACTTT 216984
Query 123008 CACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTG 123067
||| ||||| ||| ||| | ||| ||| || || |||| ||||||| ||
Sbjct 216985 CACCCACGCTTCTCCAACTCTCTTCAACGCTGGAACTCCTCATTCTCAAATGTCTTCCTG 217044
Query 123068 TTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TT 123126
||| ||| ||||| || || ||| |||| || ||||| || ||| | | || |
Sbjct 217045 TTTCTTGGTCACCATGAAGGACGACTCCATCGAAGGAATCTACGACACTCT-CAAGACGT 217103
Query 123127 GCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCC 123186
| || |||| ||||| || || || || || | ||||| ||| || | | ||
Sbjct 217104 GTGCCATGATCTCCAAGACTGCAGGTGGAATCGGTCTCAACGTCCACAACATTCGTGGAA 217163
Query 123187 GCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAG 123246
||| ||| | ||| | ||| || || ||| ||| ||||||| || |
Sbjct 217164 CTGGATCTTACATTGCTGGAACCAATGGATTCTCCAACGGTATCGTTCCCATGCTACGTG 217223
Query 123247 TTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGG 123303
| ||||| ||| | | | ||||||| || || || ||| || ||| || | |
Sbjct 217224 TCTACAACAACACTGCTAGATACGTCGATCAAGGAGGAAACAAGCGTCCAGGTGCCTTTG 217283
Query 123304 CGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACA 123363
| ||||| | || || ||||| || || | ||| || || || || |||
Sbjct 217284 CCATCTACTTGGAGCCATGGCATTCAGACGTCTTCGAATTCTTGGATCTACGTAAGAACC 217343
Query 123364 TGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGT 123423
|| ||| ||| ||| | || |||| |||||| | ||| | || || | |
Sbjct 217344 ACGGAAAGGAGGAAGTTCGTGCCAGAGAACTGTTCTACGCTCTTTGGATTCCAGACCTCT 217403
Query 123424 TTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCG 123483
| ||| | ||| | | ||| | ||||| || | ||||| | || || |
Sbjct 217404 TCATGAAGAGAGTAGAGAAGAACGAGGATTGGTCTCTACTTTGTCCTGGAGAATGCCCAG 217463
Query 123484 GCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAG 123543
| | ||||| ||||| | | || || | | ||| | | ||||| |||||
Sbjct 217464 GTCTCGCTGACGTCTACGGAGAGGAATTCGAAGCTCTTTACACCAAGTACGAATCCGAAG 217523
Query 123544 -----GCAAACAGGTTAGTC-AGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAA 123597
|| || || ||| | | | || | |||| | | || | |||
Sbjct 217524 GTAGAGCCAAGAGAACCGTCAAAGCT----CAAAAGCTTTGGT--ATGCCATCTTGGAAG 217577
Query 123598 CACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGC-AACAGGAAAACC 123656
| ||| |||||| |||| || |||||||| ||||| |||| |||| ||||| || |
Sbjct 217578 CTCAAACCGAAACTGGAAATCCTTACATGCTTTACAAGGACG-CTGCAAACAGAAAGAGT 217636
Query 123657 AATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATAC 123716
|| |||| ||| | ||||| || || || || ||||| | ||||| |||||||||
Sbjct 217637 AACCAGAAGAACCTAGGAACCATCAAGTGCTCAAACCTTTGTACTGAAATCATCGAATAC 217696
Query 123717 AGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757
|| | | | ||| |||| ||||| || || |||||||| ||
Sbjct 217697 AGTGCTCCGGATGAAGTAGCCGTCTGCAACTTGGCTTCCAT 217737
>seq1
Length=2409711
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196
||| || || ||||||||||| || || ||||| | |||| | ||| ||||||||
Sbjct 336350 ATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCATCTTCCAATTG 336409
Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256
||||| || | || |||| ||| || || || ||||| ||||| || ||||| |||||
Sbjct 336410 CTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTT 336469
Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||| || | ||||| |||||| || ||||| || | || || || ||
Sbjct 336470 GGCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTGATAGTCTTACCCGT 336529
Query 45317 TAGAGTTTTTACAAAAATTTGC 45338
|| || || || |||||||||
Sbjct 336530 TAAGGTCTTAACGAAAATTTGC 336551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452002844047480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |