Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4 120 3e-22 seq28 109 5e-19 seq1 95.1 1e-14 >seq4 Length=1327562 Score = 120 bits (132), Expect = 3e-22 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || || | || || || |||||||||||||| || || | Sbjct 1257955 ATACCTCCACGAAGACGTAAGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGT-- 1258012 Query 45171 CTGAC--GGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||||| |||| || || || ||||| ||||||||| | ||||||| ||| || || | Sbjct 1258013 CTGACAAGGTTCTACCGTCTTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGG 1258072 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | || || ||||| || || |||||||| ||||| || | || | ||| || ||| Sbjct 1258073 GTGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGA-CGTTGTCGATGGTATCTCCAGAT 1258131 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||||||| | || || || || | || || ||||| |||||||| Sbjct 1258132 TCGACTTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTGACAAAGATTTGCAT 1258184 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || ||||||||||| || || |||||||| | ||| || || |||||||| Sbjct 1257753 ATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAAAGTTCTACCGTCTTCCAATTG 1257812 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||||| || | || | ||||| || || || ||||| || || || ||||||| | | Sbjct 1257813 TTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTCCTTGTCTTGAA-TCT 1257871 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 ||| | | || | || | || || ||| |||||||| | ||||| || || |||| Sbjct 1257872 TTGCCTTAACGTTATCAATAGTATCACTAGATTCGACTTCCAAAGTAATAGTCTTTCCGG 1257931 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | | ||| || || ||||||||||| Sbjct 1257932 TCAAAGTCTTGACGAAAATTTGCAT 1257956 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || ||| | ||||||| || ||||| || |||||||||||||| Sbjct 1258560 TCTTCCAATTGCTTACCGGCGAAGATCAATCTCTGTTGGTCAGGTGGAATGCCTTCTTTG 1258619 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| ||||| |||| || | |||||| |||||| || || ||||| | Sbjct 1258620 TCTTGGATTTTAGCCTTGACATTGTCAATGGTGTCTCCAGACTCTACCTCTAGAGTGATA 1258679 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| ||||| ||||| || || ||||| Sbjct 1258680 GTCTTTCCGGTAAGAGTCTTTACGAAGATCTGCAT 1258714 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 45177 GTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATG 45236 ||| || ||| |||| ||| ||||| || | || | ||||| ||||| || || || Sbjct 1259052 GTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATA 1259111 Query 45237 CCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTC 45295 ||||| ||||||||||| ||| || | || | || | |||||| ||| || ||||| Sbjct 1259112 CCTTCCTTATCTTGAATCTTTGCCTTTA-CGTTGTCGATGGTGTCACCAGATTCCACTTC 1259170 Query 45296 GAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||| | || || || |||| |||||| || || ||||||||| Sbjct 1259171 GAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAGATTTGCATC 1259216 >seq28 Length=226377 Score = 109 bits (120), Expect = 5e-19 Identities = 558/881 (63%), Gaps = 19/881 (2%) Strand=Plus/Plus Query 122888 AATCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGT 122947 |||| | | |||||||||||||||| |||||| ||||||||||| ||||| || || | Sbjct 216865 AATCAATGGAAAGGTCGCCGAACGTCCTCAACACATGCTCATGCGTGTCGCCATTGGAAT 216924 Query 122948 GCACGGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTT 123007 || ||| |||| ||||||| || | ||| ||||| | | ||||| | || ||| Sbjct 216925 CCATGGAACCGACGTCGAAAAGGCCATCGAGACTTATAACCTCATGTCCGAGAAGACTTT 216984 Query 123008 CACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTG 123067 ||| ||||| ||| ||| | ||| ||| || || |||| ||||||| || Sbjct 216985 CACCCACGCTTCTCCAACTCTCTTCAACGCTGGAACTCCTCATTCTCAAATGTCTTCCTG 217044 Query 123068 TTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TT 123126 ||| ||| ||||| || || ||| |||| || ||||| || ||| | | || | Sbjct 217045 TTTCTTGGTCACCATGAAGGACGACTCCATCGAAGGAATCTACGACACTCT-CAAGACGT 217103 Query 123127 GCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCC 123186 | || |||| ||||| || || || || || | ||||| ||| || | | || Sbjct 217104 GTGCCATGATCTCCAAGACTGCAGGTGGAATCGGTCTCAACGTCCACAACATTCGTGGAA 217163 Query 123187 GCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAG 123246 ||| ||| | ||| | ||| || || ||| ||| ||||||| || | Sbjct 217164 CTGGATCTTACATTGCTGGAACCAATGGATTCTCCAACGGTATCGTTCCCATGCTACGTG 217223 Query 123247 TTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGG 123303 | ||||| ||| | | | ||||||| || || || ||| || ||| || | | Sbjct 217224 TCTACAACAACACTGCTAGATACGTCGATCAAGGAGGAAACAAGCGTCCAGGTGCCTTTG 217283 Query 123304 CGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACA 123363 | ||||| | || || ||||| || || | ||| || || || || ||| Sbjct 217284 CCATCTACTTGGAGCCATGGCATTCAGACGTCTTCGAATTCTTGGATCTACGTAAGAACC 217343 Query 123364 TGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGT 123423 || ||| ||| ||| | || |||| |||||| | ||| | || || | | Sbjct 217344 ACGGAAAGGAGGAAGTTCGTGCCAGAGAACTGTTCTACGCTCTTTGGATTCCAGACCTCT 217403 Query 123424 TTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCG 123483 | ||| | ||| | | ||| | ||||| || | ||||| | || || | Sbjct 217404 TCATGAAGAGAGTAGAGAAGAACGAGGATTGGTCTCTACTTTGTCCTGGAGAATGCCCAG 217463 Query 123484 GCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAG 123543 | | ||||| ||||| | | || || | | ||| | | ||||| ||||| Sbjct 217464 GTCTCGCTGACGTCTACGGAGAGGAATTCGAAGCTCTTTACACCAAGTACGAATCCGAAG 217523 Query 123544 -----GCAAACAGGTTAGTC-AGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAA 123597 || || || ||| | | | || | |||| | | || | ||| Sbjct 217524 GTAGAGCCAAGAGAACCGTCAAAGCT----CAAAAGCTTTGGT--ATGCCATCTTGGAAG 217577 Query 123598 CACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGC-AACAGGAAAACC 123656 | ||| |||||| |||| || |||||||| ||||| |||| |||| ||||| || | Sbjct 217578 CTCAAACCGAAACTGGAAATCCTTACATGCTTTACAAGGACG-CTGCAAACAGAAAGAGT 217636 Query 123657 AATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATAC 123716 || |||| ||| | ||||| || || || || ||||| | ||||| ||||||||| Sbjct 217637 AACCAGAAGAACCTAGGAACCATCAAGTGCTCAAACCTTTGTACTGAAATCATCGAATAC 217696 Query 123717 AGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 || | | | ||| |||| ||||| || || |||||||| || Sbjct 217697 AGTGCTCCGGATGAAGTAGCCGTCTGCAACTTGGCTTCCAT 217737 >seq1 Length=2409711 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || ||||||||||| || || ||||| | |||| | ||| |||||||| Sbjct 336350 ATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCATCTTCCAATTG 336409 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||||| || | || |||| ||| || || || ||||| ||||| || ||||| ||||| Sbjct 336410 CTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTT 336469 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | ||||| |||||| || ||||| || | || || || || Sbjct 336470 GGCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTGATAGTCTTACCCGT 336529 Query 45317 TAGAGTTTTTACAAAAATTTGC 45338 || || || || ||||||||| Sbjct 336530 TAAGGTCTTAACGAAAATTTGC 336551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002844047480