Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4 116 9e-21 seq28 104 6e-17 seq1 96.9 8e-15 seq15 89.7 1e-12 >seq4 Length=1327562 Score = 116 bits (128), Expect = 9e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 199445 TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGA 199504 |||| ||||||||| | | ||| || ||||||||||| |||||||| || ||||||||| Sbjct 1259031 TGGATGTTGTAGTCTGAAAGAGTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAGA 1259090 Query 199505 CGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACG 199564 || || ||||| ||| || ||||| || ||||||||| ||| ||| |||| | Sbjct 1259091 CGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTGCCTTTACGTTGTCGATG 1259150 Query 199565 GTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATT 199624 ||||| | ||| || || | ||||| ||||| || || | |||||| || || ||| Sbjct 1259151 GTGTCACCAGATTCCACTTCGAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAGATT 1259210 Query 199625 TG 199626 || Sbjct 1259211 TG 1259212 >seq28 Length=226377 Score = 104 bits (114), Expect = 6e-17 Identities = 192/279 (69%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 167740 GTGCTTTTGGTTATTTTTGCGGCATATGGCGTCCTTGTAGACGATGAAGGGCATACCAAC 167799 || ||| |||||| | || | | | ||||||||||| | ||| | || | ||| Sbjct 217648 GTTCTTCTGGTTACTCTTTCTGTTTGCAGCGTCCTTGTAAAGCATGTAAGGATTTCCAGT 217589 Query 167800 CTCCGCTTGAGCCACCAAAATGTGGTGCCAAAGTTCTTGGGCTTTTACGGTAGTTCTCGC 167859 || | |||||| |||| ||| | |||||| | ||| ||||| ||||| | | || Sbjct 217588 TTCGGTTTGAGCTTCCAAGATGGCATACCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGC 217529 Query 167860 TCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTCGTC 167919 ||| ||||| |||||| | || || ||||||| |||| ||||| | || | Sbjct 217528 TCTACCTTCGGATTCGTACTTGGTGTAAAGAGCTTCGAATTCCTCTCCGTAGACGTCAGC 217469 Query 167920 AAGACCGGGAGCTTCCTTC-GGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCTCT 167978 ||||| || || | || | ||||||| ||| ||||| | | |||| || |||| Sbjct 217468 GAGACCTGG-GCATTCTCCAGGACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCT 217410 Query 167979 TCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAACAATT 168017 ||||||||||||| | | |||||| |||||||||| || Sbjct 217409 TCATGAAGAGGTCTGGAATCCAAAGAGCGTAGAACAGTT 217371 >seq1 Length=2409711 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||||| || |||||||| | ||||||||| | || || || || ||| Sbjct 640282 AGGACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGATAAGGTTCTACCGTCT 640341 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||| |||||||| || || || || || ||| |||||| || Sbjct 640342 TCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGATCGGGTGGAATACCTTCTTTGTCT 640401 Query 199538 TGAATCTT 199545 |||||||| Sbjct 640402 TGAATCTT 640409 >seq15 Length=848729 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| || ||||| |||| ||||| || || ||| || || ||| Sbjct 552196 AGGACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCT 552137 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || || ||||| | | || ||||| ||| |||||||| || Sbjct 552136 TCCAACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCT 552077 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | ||| || || | ||||||||| Sbjct 552076 TGGATCTTGGCCTTGACATTGTCAATGGTGTCACCGGATTCGACCTCTAGGGTGATCGTC 552017 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || || || |||||||| Sbjct 552016 TTACCGGTCAAGGTCTTGACGAAAATTTG 551988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920648389221