Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq23 95.1 1e-14 seq4 87.8 2e-12 seq1 84.2 2e-11 >seq23 Length=563827 Score = 95.1 bits (104), Expect = 1e-14 Identities = 221/329 (67%), Gaps = 16/329 (5%) Strand=Plus/Plus Query 132892 AAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTC 132951 || ||||| || ||| ||| || || || || || ||||| | |||||| |||||| Sbjct 139421 AAACAAGCGAAATCGGTATGTAAACCTTCATCTCTTGAAATCAATTCGTTAGAAAAAGTC 139480 Query 132952 AAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAG 133011 || || ||||| | || | || |||| ||| || || | || ||| || || || Sbjct 139481 AAACCTGGCATTAAACCTCTCTTCTTGATCCAGAAGATTGAAGCAAAAGATCCAGAGAAA 139540 Query 133012 AAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG 133071 |||| || |||||||| |||||||| || | | || | || || |||| || || Sbjct 139541 AAGATACCTTCGACGGCAGCGAAAGCTACTAATCTTTCAGCAAAGGTTGCTT---TGGTG 139597 Query 133072 GC---GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATG 133128 | |||||| | | |||||||| |||||| ||||||| || ||||| || | | Sbjct 139598 TCATTGATCCATCTTAAAGCCCATTCTCCCTTTTGTTTGACGACTGGAATCGTCTCTAAG 139657 Query 133129 GCGTTCAACA--AACGGA-GTTTCTCTTCCGAGGA--ACGCACGTAGGTGTCGATGAGGG 133183 || | || | || | | ||| ||| ||| ||| | ||||||||||||||| Sbjct 139658 GCATCAAAGAGGAAAGTACGTTGATCT-----GGATCACGAATGTAGGTGTCGATGAGTA 139712 Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCC 133212 || || |||| ||||| | ||| ||| Sbjct 139713 GAGAGTAGGTTTCGGAGTGGATGTTTTCC 139741 >seq4 Length=1327562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || || || || | || ||||| | | Sbjct 1257956 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGT 1257897 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| |||| | ||| || | ||||| ||||||||||| | || || Sbjct 1257896 GATACTATTGATAACG-TTAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCTGATCA 1257838 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | || || ||||| |||| |||| | || | | ||| ||||| Sbjct 1257837 ACAACGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGCGATTACAA 1257778 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| ||||||||| | || || |||||||| || ||| Sbjct 1257777 CATTCAAAAGGAATCCACCCTTCATTTGGTTCTTCGT 1257741 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || || |||||||| |||| ||||| | Sbjct 1258184 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGA 1258125 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | |||| ||||| | ||||| || ||||| || |||| || Sbjct 1258124 GATACCATCGACAACG-TCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCCGATCA 1258066 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | |||| ||| || || || | || |||| | ||| | |||||||| Sbjct 1258065 ACAAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCAGACTACAA 1258006 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||||||||||||| |||| || || ||||| Sbjct 1258005 CATCCAAAAGGAATCGACTCTTCACTTGGT 1257976 >seq1 Length=2409711 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 |||||||| || ||||| |||| ||||| || ||||| | || || || || || || Sbjct 640400 GACAAAGAAGGTATTCCACCCGATCAACAACGACTCATCTTTGCCGGAAAGCAACTAGAA 640341 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| | ||| | ||||||||||| ||||||||| | || || |||||||| || Sbjct 640340 GACGGTAGAACCTTATCAGACTACAACATTCAAAAGGAATCCACTCTCCATTTGGTCCTA 640281 Query 38457 CGTTTGAGAGGCGG 38470 ||| | ||||| || Sbjct 640280 CGTCTTAGAGGTGG 640267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172406113920