Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4 134 5e-26 seq14 129 2e-24 seq1 120 1e-21 seq15 100 1e-15 seq6 89.7 2e-12 >seq4 Length=1327562 Score = 134 bits (148), Expect = 5e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || |||| || || ||||||||| | || || ||||| | Sbjct 1257956 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGT 1257897 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| |||| ||| |||||||| ||||| |||||||| ||||||||| Sbjct 1257896 GATACTATTGATAACGTTAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCTGATCAA 1257837 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || || | || |||||| | ||||| || ||||||||| ||||| || Sbjct 1257836 CAACGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGCGATTACAAC 1257777 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || ||||| || || Sbjct 1257776 ATTCAAAAGGAATCCACCCTTCATTTGGT 1257748 Score = 125 bits (138), Expect = 3e-23 Identities = 211/306 (69%), Gaps = 12/306 (4%) Strand=Plus/Minus Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 ||| ||| ||||||| | || ||||| ||||| ||||||||||| ||||| ||||| || Sbjct 1021764 AGTCACTCATGCAGTCGTCACAGTTCCAGCTTACTTCAATGATGCTCAACGTCAAGCGAC 1021705 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| ||| | | || | || | |||| | | || |||||||| || || Sbjct 1021704 AAAAGATGCTGGAGAGCTGGCAAATCTAGAGATTCTCGGCGTAATAAATGAACCGACTGC 1021645 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATC------AAAAGAAACAGAAGaaaaaaa--- 451482 ||| ||||||| ||||| || |||| || ||| | | ||| | | || | Sbjct 1021644 CGCTTCTCTAGCCTATGGTCTTGGAACTTCTAGAGGAAATGGGAAAGATGGAGAAGAGTC 1021585 Query 451483 ---TATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGA 451539 ||||||| | ||| |||| || |||||| || ||| | | ||| | Sbjct 1021584 TCGAGTTTTAGTCTACGATCTTGGAGGCGGAACTTTCGACGTTTCATTGTTGGAGATTCA 1021525 Query 451540 AGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATAT 451599 |||||| || |||||||| |||||| ||| ||||||||| ||||||| |||||| | Sbjct 1021524 AGATGGAGTCTTTGAAGTGCTGGCAACTTCTGGAGATACTCATTTAGGAGGCGAAGATTT 1021465 Query 451600 TGATAA 451605 ||||| Sbjct 1021464 CGATAA 1021459 Score = 114 bits (126), Expect = 5e-20 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 452219 ATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTT 452278 |||||||| ||||| ||||||||| ||||||| || || || |||| ||| | || Sbjct 780673 ATTCAAGTCTTTGAGGGAGAACGTTCAATGACCAAGGACAACAACCAACTTGGAAAGTTC 780614 Query 452279 ACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGAT 452338 | | |||||||| ||| || | ||| |||||| |||||| | |||| ||| Sbjct 780613 GAATTGACCAACATTCCACCTGCTCCTCGTGGAGTTCCTCAGATTGAAGTCACCTTTGAA 780554 Query 452339 GTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAA 452398 || ||||| |||||||| | || || ||| | || ||| | ||||||| ||| Sbjct 780553 GTCGATGCCAATGGTATCATGAAGGTTTCTGCTGCCGATAAAGGAACTGGAAAGAGTGAA 780494 Query 452399 AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTA 452458 || || || ||||| || ||| ||| ||||| ||||||||||||| | ||||||| Sbjct 780493 TCCATCACCATCACTAACGACAAAGGTCGTCTATCTCAAGAAGATATTGATAGAATGGTA 780434 Query 452459 GAT 452461 || Sbjct 780433 AAT 780431 Score = 109 bits (120), Expect = 2e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||| || || || || ||||| || || ||||| Sbjct 1258184 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGA 1258125 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | ||| |||||||| || ||||||||||| || || |||||| Sbjct 1258124 GATACCATCGACAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCCGATCAA 1258065 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || |||||| |||| || ||| | ||||| || ||||| ||| | || || || Sbjct 1258064 CAAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCAGACTACAAC 1258005 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTA 391262 || | ||||| | || |||||||| || ||| Sbjct 1258004 ATCCAAAAGGAATCGACTCTTCACTTGGTCTTA 1257972 Score = 104 bits (114), Expect = 9e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| | ||||| || || || ||||| || || ||||| | Sbjct 1259215 ATGCAAATCTTCGTCAAAACTTTAACTGGAAAGACCATCACTCTCGAAGTGGAATCTGGT 1259156 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | || ||| ||||||||||||||||| || |||||||| ||| Sbjct 1259155 GACACCATCGACAACGTAAAGGCAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAA 1259096 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACT 391214 |||||| | || || | || || ||||| |||||||| |||||| Sbjct 1259095 CAACGTCTCATCTTTGCTGGAAAGCAACTGGAAGATGGTAGAACT 1259051 Score = 86.0 bits (94), Expect = 2e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 451841 ATGAAACCTGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAA 451900 ||||||||||| | |||||| || | ||| || ||| || || | || || || Sbjct 781159 ATGAAACCTGTAGCTCAAGTTTTGAAGGATGCTGGGGTTAAAAAGGAGGATATCGACGAT 781100 Query 451901 ATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTAT 451960 | ||| | || ||||||||||| ||||||| || ||||||| ||||| || Sbjct 781099 GTAGTGTTGGTTGGAGGTTCTACTAGAATTCCAAAGGTTCAAGAATTGTTGAAGGAATAC 781040 Query 451961 TTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCT 452020 |||| ||||| ||| | |||| | | || ||||||||||| || || | |||||| Sbjct 781039 TTTGATGGAAAGGAACCAAGTAAAGGTATTAACCCTGATGAAGCCGTAGCTTGGGGTGCT 780980 Query 452021 GCAGTTCAAG 452030 || ||||||| Sbjct 780979 GCTGTTCAAG 780970 >seq14 Length=903556 Score = 129 bits (142), Expect = 2e-24 Identities = 348/525 (66%), Gaps = 12/525 (2%) Strand=Plus/Plus Query 248488 CATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGATATGCCTTTCACATCA 248547 ||||||||||| ||||| |||| || || | |||| ||||||||| ||||| || Sbjct 719758 CATGGACAAAAGGGAACTATTGGAATCACCTATAGACAAGAAGATATGCCATTCACTTCC 719817 Query 248548 GAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCTACACGTATGACTATG 248607 |||||||| || ||||| | ||| ||||||| |||| ||| || | |||||||| || Sbjct 719818 GAAGGTATCACACCAGACATCATTATCAATCCTCATGCTATTCCATCTCGTATGACGATT 719877 Query 248608 GGACAATTAGCAGAAACACTTGCATCAAAAGCTGCAGCTAATATTGGTGAATTATTTGAT 248667 ||||| |||| ||| | ||| |||| || || | ||| || | ||| Sbjct 719878 GGACATTTAGTCGAATGTTTGTTATCCAAAGTAGCCACTCTTTCAGGTCAAGAAGGAGAT 719937 Query 248668 GGAACACCTTTTTCAGATTATGATGTTACCGAA---ATTCCTAAAGTTCTAAAAGAATTA 248724 | || || ||| | || | ||| || ||| || || | ||| ||||||| Sbjct 719938 GCTACGCCATTTACCGAAT-TGACAGTA--GAAGCCGTTTCT-CATATCTTGAAGAATTT 719993 Query 248725 GGAATGGATGAATATGGA--ACTGAAGA-AATGTATTGTGGAATGACAGGGCGGAAAATG 248781 | | || ||| | || | || ||| |||||| ||| || || |||| || Sbjct 719994 AGGTT--ATCAATCTAGAGGATTGGAGATCATGTATAATGGTCATACTGGTAAGAAATTG 720051 Query 248782 AAAGCTAGAATTTTCATTGGTCCTATGTTTTATTTGAGACTTAAACATATGGTACTTGAT 248841 ||||| ||| | ||||| | | |||| |||| | ||||||||||| |||| Sbjct 720052 CAAGCTCAGGTTTATTTGGGTCCAACTTATTATCAGAGATTGAAACATATGGTGGATGAT 720111 Query 248842 AAAGTTCATTCCAGAAGTATGGGTCCTAGACAAGCTATTACTAGACAACCCATGGAAGGA 248901 || ||||||| ||| || ||||| ||| | ||||||||||| | ||||| Sbjct 720112 AAGATTCATTCTAGAGCTAGAGGTCCGGTTCAAATCTTGACTAGACAACCTGTAGAAGGT 720171 Query 248902 CGTTCTAAAGATGGAGGTCTTAAAATTGGAGAGATGGAAAAAGATGCAATGGTTGCTCAT 248961 | |||| |||||| || | | | ||||||| ||||||| |||| ||| | ||||| Sbjct 720172 AGATCTAGAGATGGTGGATTGAGATTTGGAGAAATGGAAAGAGATTGTATGATCTCTCAT 720231 Query 248962 GGAATAGGACAATTCTTAAAAGAACGAATGATGGAAAATTCTGAT 249006 || |||| ||||| || || ||||| | || ||||||| Sbjct 720232 GGTATAGCTGGTTTCTTGAAGGAGAGAATGTTTGACGCTTCTGAT 720276 >seq1 Length=2409711 Score = 120 bits (132), Expect = 1e-21 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 ||||||||||| || | || ||||| ||||| || || || ||||| || ||| | Sbjct 336547 ATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGACACT 336488 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 || || | | || ||||| ||||| |||||||||||||| || ||||||||| | Sbjct 336487 ATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACAAAGA 336428 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 ||||| || | || || ||| | |||||||||||||| | ||||||| || ||| | Sbjct 336427 TTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGGATTACAACATTCAA 336368 Query 391236 AAGGATGCAACACTTCACTTAGTA 391259 ||||| | || ||||| || ||| Sbjct 336367 AAGGAATCTACTCTTCATTTGGTA 336344 Score = 89.7 bits (98), Expect = 2e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 ||||| ||||| ||||||||||| || || |||||||||||| |||| || | || || Sbjct 640884 AAAATCCAAGACAAGGAAGGAATCCCACCGGATCAACAACGTCTAATCTTTGCTGGAAAG 640825 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 ||| | || ||||| || ||| || | ||||| || || | || || |||| || ||| Sbjct 640824 CAATTGGAGGATGGTAGGACTCTGTCTGATTACAACATCCAGAAAGAATCAACCCTGCAC 640765 Query 391254 TTAGTATTA 391262 || ||| || Sbjct 640764 TTGGTACTA 640756 >seq15 Length=848729 Score = 100 bits (110), Expect = 1e-15 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 |||||||| || || |||| ||||| || || || || || || ||||| ||| | | Sbjct 551991 ATTTTCGTCAAGACCTTGACCGGTAAGACGATCACCCTAGAGGTCGAATCCGGTGACACC 552050 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 ||||| | | || || || ||||| ||||||||||| ||||| || |||||| | Sbjct 552051 ATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGACCAACAAAGA 552110 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 || || || | || ||||| | ||||| || |||||| || ||||| ||||| | Sbjct 552111 TTGATCTTTGCTGGTAAACAGTTGGAAGACGGTAGAACTCTGAGCGATTACAATATCCAG 552170 Query 391236 AAGGATGCAACACTTCACTTAGT 391258 ||||| | || || ||||| || Sbjct 552171 AAGGAATCCACTCTGCACTTGGT 552193 >seq6 Length=1288008 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || |||||||||||||||||||||||||| ||||| |||||| | || ||| |||| ||| Sbjct 395359 AAGATTCAAGATAAGGAAGGAATTCCTCCCGATCAGCAACGTATTATCTTCGCAGGTAAA 395300 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGA 391222 || || ||||| || |||||||| || Sbjct 395299 CAGCTAGAAGACGGTCATACTTTGGCAGA 395271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975716805224804