Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3 178 1e-38 seq14 91.5 1e-12 >seq3 Length=1594217 Score = 178 bits (196), Expect = 1e-38 Identities = 670/1042 (64%), Gaps = 28/1042 (3%) Strand=Plus/Plus Query 517280 TTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATC 517339 |||||||| | ||| || |||||||| ||||| ||||| || | |||||||||| || Sbjct 737873 TTGGCATCGACATCGAAGGTGACTTCGATTTGTGGGACACCACGAGGAGCAGGTGGAATA 737932 Query 517340 CCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCG 517399 || | | || |||| ||| || || || || || || || || ||| Sbjct 737933 CCAGAGAGTTCGAACTTTCCGAGAAGGTTGTTGTCCTTGGTACGAGCACGCTCTCCTTCG 737992 Query 517400 AAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTT 517458 || | ||| || |||| | | | ||| || || | ||||| | || ||| ||||| Sbjct 737993 AAGACTTGAATGAGTA-CACCTGGTTGGTTGTCGGCGTAAGTGGAGAAGACTTCTGATTT 738051 Query 517459 TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTC 517518 || || | || |||||||| | || | | || | | |||||| || || || Sbjct 738052 CTTGGTTGGGACGGTAGTGTTTCTCTTGATTAGAGGAGTGAAGACACCACCAGCGGTCTC 738111 Query 517519 TAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGT 517578 | ||| | || ||||||| |||||| | ||| | || || |||| |||||| ||| Sbjct 738112 GATACCCATGGATAGAGGAGCGACATCGAGTAGAAGAAGATCTTGAGTCTTTTCAGAAGT 738171 Query 517579 TTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATT 517638 | ||| |||||| || ||||| | ||||| || || || || || || || || || Sbjct 738172 GTCACCTGAAAGAATGGCAGCTTGGACGGCAGCTCCGTAGGCGACGGCCTCGTCTGGGTT 738231 Query 517639 AACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGG 517698 | | | ||| ||| ||| ||||| |||| || || | | || | || Sbjct 738232 GATGGACTTGTTTGGTTCACGACCGTTGAAGAAATCCCTGAGGAGCTTTTGAACTCTTGG 738291 Query 517699 AATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT---TTATCCAGTTT 517755 ||||||| || ||||| || || || ||||| | || |||| || || | || Sbjct 738292 GATACGAGTGGAACCTCCGACCAAGACGATTTCGTTGAC---TGATCCCTTGTCGATCTT 738348 Query 517756 TGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAA----ACAAGTCTGAAC 517811 |||||| | || || || || ||||| | | | | | | | ||| || Sbjct 738349 TGAATCTCTGAGGACCTTCTCTACTGGTTCGAT----GGTGTGAGAGAAGAGGTCACCAC 738404 Query 517812 AAAGTTCTTCGAATTTAGCTCTAGTAAG---AGTGACATTATAA-TCAATTCCTTCGAAC 517867 | || || ||||| ||| | || || |||| || || || || |||||||| Sbjct 738405 AGAGCTCCTCGAAACGAGCACGGGTTAGGGAAGTG----TAGAAGTCGATACCTTCGAAG 738460 Query 517868 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 517927 | ||| || | ||| | | ||| || | | ||||| || | | |||||||| ||| Sbjct 738461 AGAGAGTCGATTTCCAAGGAAGTCTGGGCAGCTGAAGAGAGAGTTCTCTTAGCACGCTCA 738520 Query 517928 CATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATT 517985 || || || | ||| | || | || || ||| | | | || | || | | Sbjct 738521 CAGGCGGTACGTAGACGACGAAGAGCACGAGCG--TTGGTGGTGAGGTCCTTCTTGTTCT 738578 Query 517986 TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCA 518045 |||||||||| || | || | | || ||||| || || || || || ||||||| Sbjct 738579 TTCTCTTGAATTCCTGGACGAAGTGGTTGACTAGACGGTTGTCGAAGTCCTCTCCTCCCA 738638 Query 518046 ATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAG 518105 | | ||| | ||| | || || | |||| ||| | || || || | | | ||||| Sbjct 738639 AGTGAGTGTCTCCGGCGGTGGCCTTGACTTCGAAGATACCTTCCTCGATGGTTAGAAGAG 738698 Query 518106 TTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGT 518165 ||||| ||| || || |||| ||| || || || || ||| | || ||| | Sbjct 738699 AGACATCGAAGGTACCTCCTCCCAAATCGAAGATGAGGACGTTCTTCTCACCCTCTCCCT 738758 Query 518166 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225 | || || ||||| || || | ||||| ||||||||||| || || || | || || | Sbjct 738759 TCTTGTCTAGACCGTAAGCGATGGCAGCGGCAGTTGGTTCGTTGATGATACGCATGACGT 738818 Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285 | ||||||||||| ||| ||||| || |||||||| | ||| |||||||| || || | Sbjct 738819 TGAGACCAGCAATGACTCCAGCATCCTTTGTGGCTTGACGTTGAGAATCGTTGAAGTAGG 738878 Query 518286 CAGGAACAGTAATAACGGCATC 518307 | || ||||| | |||||||| Sbjct 738879 CTGGGACAGTGACGACGGCATC 738900 >seq14 Length=903556 Score = 91.5 bits (100), Expect = 1e-12 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 303738 TCCACCATCTCTTGATCTACCTTCTGGCGCTTGTCTTGTAAGTAACTGTGTTGGTCCACG 303797 |||||||||||| |||||||||||| | |||||| || | | || || || | Sbjct 720189 TCCACCATCTCTAGATCTACCTTCTACAGGTTGTCTAGTCAAGATTTGAACCGGACCTCT 720130 Query 303798 AGCGCGTGAGTGGGCCTTGTCGCCTACCATTTGTTTCAATCTCTGATAATATGTCGGACC 303857 ||| | || || ||| || | ||||| |||||||||||||||||||| || ||||| Sbjct 720129 AGCTCTAGAATGAATCTTATCATCCACCATATGTTTCAATCTCTGATAATAAGTTGGACC 720070 Query 303858 AATAAAAATTTTAACTGGTAATTTTTTACCATTCATTCCATTATACAT 303905 | | ||| | | || | ||||| |||||| | ||||||||||| Sbjct 720069 CAAATAAACCTGAGCTTGCAATTTCTTACCAGTATGACCATTATACAT 720022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780819273732478