Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3 389 5e-103 seq28 136 5e-27 seq9 116 5e-21 seq4 95.1 2e-14 >seq3 Length=1594217 Score = 389 bits (430), Expect = 5e-103 Identities = 782/1156 (68%), Gaps = 8/1156 (1%) Strand=Plus/Plus Query 6658 CTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATC 6717 |||||| |||||||| | |||| || ||||| || ||||| || | || ||||| Sbjct 737821 CTTTTCAGATTTACCAGTACCCTTTTCGGCAGCAGAGACGTTCAAGATGGCGTTGGCATC 737880 Query 6718 AACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAA 6777 |||||||| | || | |||||||| ||| | || || | ||||||||| | | Sbjct 737881 GACATCGAAGGTGACTTCGATTTGTGGGACACCACGAGGAGCAGGTGGAATACCAGAGAG 737940 Query 6778 ATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTT 6837 || || | || || | |||| ||| | | ||| || ||||| |||||| Sbjct 737941 TTCGAACTTTCCGAGAAGGTTGTTGTCCTTGGTACGAGCACGCTCTCCTTCGAAGACTTG 738000 Query 6838 AATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGG 6897 ||| || | ||||| || || || ||||||| || | |||||| | ||| Sbjct 738001 AATGAGTACACCTGGTTGGTTGTCGGCGTAAGTGGAGAAGACTTCTGATTTCTTGGTTGG 738060 Query 6898 AATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAG 6957 | || || |||||| || | || || | | |||||| || |||| || | Sbjct 738061 GACGGTAGTGTTTCTCTTGATTAGAGGAGTGAAGACACCACCAGCGGTCTCGATACCCAT 738120 Query 6958 AGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGT 7017 || ||||| | || || | || | || |||||| ||| ||||| | Sbjct 738121 GGATAGAGGAGCGACATCGAGTAGAAGAAGATCTTGAGTCTTTTCAGAAGTGTCACCTGA 738180 Query 7018 TAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTT 7077 | ||||| |||||||| | || ||||| ||||| ||||| || ||||| || | || Sbjct 738181 AAGAATGGCAGCTTGGACGGCAGCTCCGTAGGCGACGGCCTCGTCTGGGTTGATGGACTT 738240 Query 7078 ATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGT 7137 || |||| |||||| || ||||| | | | ||||| | | ||||| || || Sbjct 738241 GTTTGGTTCACGACCGTTGAAGAAATCCCTGAGGAGCTTTTGAACTCTTGGGATACGAGT 738300 Query 7138 CGATCCACCGACCAAAACGATTTCATTCACTTTCGAT---TTATCGATCTTTGAGTCTCG 7194 || || |||||||| |||||||| || ||| ||| || ||||||||||| |||| Sbjct 738301 GGAACCTCCGACCAAGACGATTTCGTTGACT---GATCCCTTGTCGATCTTTGAATCTCT 738357 Query 7195 AAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAA 7254 || || || || ||||| || | | ||| | ||| ||| || ||||| || Sbjct 738358 GAGGACCTTCTCTACTGGTTCGATGGTGTGAGAGAAGAGGTCACCACAGAGCTCCTCGAA 738417 Query 7255 ACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAAT 7314 ||| |||||||| | ||| || ||||| || | || ||| | | || || ||||| | Sbjct 738418 ACGAGCACGGGTTAGGGAAGTGTAGAAGTCGATACCTTCGAAGAGAGAGTCGATTTCCAA 738477 Query 7315 GGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACG 7374 || || || || | ||||| | |||| ||| || |||||||| || || |||| ||| Sbjct 738478 GGAAGTCTGGGCAGCTGAAGAGAGAGTTCTCTTAGCACGCTCACAGGCGGTACGTAGACG 738537 Query 7375 ACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGA 7434 |||||| ||||| | ||| || | || ||||| | || | || || || | Sbjct 738538 ACGAAGAGCACGAGCGTTGGTGGTGAGGTCCTTCTTGTTCTTTCTCTTGAATTCCTGGAC 738597 Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494 |||||| | || | ||||| || || || |||||||| || || || ||||| Sbjct 738598 GAAGTGGTTGACTAGACGGTTGTCGAAGTCCTCTCCTCCCAAGTGAGTGTCTCCGGCGGT 738657 Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554 || |||||||| ||||||||| | || ||| ||| | || ||||| || ||||| || Sbjct 738658 GGCCTTGACTTCGAAGATACCTTCCTCGATGGTTAGAAGAGAGACATCGAAGGTACCTCC 738717 Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGC 7614 |||| || || ||||| |||||| | || | ||| ||||| || |||||||| || Sbjct 738718 TCCCAAATCGAAGATGAGGACGTTCTTCTCACCCTCTCCCTTCTTGTCTAGACCGTAAGC 738777 Query 7615 GATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTG 7673 ||| || || || |||||||| || || ||||| | ||| ||| || |||||||| | Sbjct 738778 GATGGCAGCGGCAGTTGGTTCGTTGATGATACGCATGAC-GTTGAGACCAGCAATGACTC 738836 Query 7674 CCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCG 7733 | ||||| || || ||||| ||||| |||||||| |||||||| ||||| || ||||| | Sbjct 738837 CAGCATCCTTTGTGGCTTGACGTTGAGAATCGTTGAAGTAGGCTGGGACAGTGACGACGG 738896 Query 7734 CGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCA 7793 | ||| ||||| ||| ||||| | ||| || | ||| |||| || |||||||| Sbjct 738897 CATCCTTGACTGATCCACCTAGATAGGCTTCAGCAGTCTCTCTCATCTTTAGAAGAACCA 738956 Query 7794 TCGATGAAATCTCTTC 7809 | || || |||||||| Sbjct 738957 TGGAAGAGATCTCTTC 738972 >seq28 Length=226377 Score = 136 bits (150), Expect = 5e-27 Identities = 452/695 (65%), Gaps = 15/695 (2%) Strand=Plus/Minus Query 105292 ATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGACTTT-TC 105350 ||||| ||||| | ||||| | || || || || | || || ||||| |||| | Sbjct 217686 ATTTCAGTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCTGGTTACTCTTTCTG 217627 Query 105351 ATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTTAATAAT 105410 || || ||||| ||||||||||| || || |||| ||||| |||| | || | || Sbjct 217626 TTTGCA-GCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTTGAGCTTCCAAGAT 217568 Query 105411 TGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTCGTATTT 105470 || | ||||| || |||| || | | | || ||||||| |||||||| || Sbjct 217567 GGCATACCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACCTTCGGATTCGTACTT 217508 Query 105471 CTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGAT-CAG 105529 ||||||| |||| || || | ||||| ||||| | ||| ||| || | | ||| Sbjct 217507 GGTGTAAAGAGCTTCGAATTCCTCTCCGTAGACGTCAGCGAGA-CCTGGGCATTCTCCAG 217449 Query 105530 GACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCC 105589 |||||| | ||||||| | | || || | |||||||| | |||||||||| Sbjct 217448 GACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAAGAGGTCTGGAATCC 217389 Query 105590 ACATGGCTGAAAAGAGGTCTC-GACACCTCGCCTCTTCATCACCTTGATTCAAACGAATT 105648 | | || | || || |||| | || | | || || | || || ||| ||| | Sbjct 217388 AAAGAGCGTAGAACAGTTCTCTGGCA-CGAACTTCCTCCTTTCCGTGGTTCTTACGTAGA 217330 Query 105649 TCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTA 105708 || | || |||| | || | |||||||| || || |||| |||| | ||| Sbjct 217329 TCCAAGAATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGCAAAGGCACCT--- 217273 Query 105709 CGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATT 105762 ||||| || |||||| ||| ||||| || || ||| || || |||| ||| Sbjct 217272 GGACGCTTGTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGACACGTAGCATG 217213 Query 105763 GGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACA 105822 |||| ||||| | ||| |||||| |||||| ||| | ||| | || |||| | Sbjct 217212 GGAACGATACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGTTCCACGAATG 217153 Query 105823 TCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACT 105882 | ||| |||| | || || || || || ||| ||| |||||| || | Sbjct 217152 TTGTGGACGTTGAGACCGATTCCACCTGCAGTCTTGGAGATCATGGCACACGTCTTGAGA 217093 Query 105883 GTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATT 105942 || ||||| || || ||||| || ||||| | | | || |||||| || |||||| Sbjct 217092 GTGTCGTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAAACAGGAAGACATT 217033 Query 105943 TGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGG 105977 || | || || ||||| ||||| |||||||| Sbjct 217032 TGAGAATGAGGAGTTCCAGCGTTGAAGAGAGTTGG 216998 >seq9 Length=1253739 Score = 116 bits (128), Expect = 5e-21 Identities = 412/637 (65%), Gaps = 20/637 (3%) Strand=Plus/Minus Query 7025 GCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGT 7084 || |||||||| | || ||||| ||||| || || || ||||| || | || |||| | Sbjct 1148758 GCAGCTTGGACGGCAGCTCCGTAAGCGACAGCTTCGTCTGGGTTGATGGACTTGTTCAAT 1148699 Query 7085 TCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCA 7144 | ||| || || || || | | |||||| || ||||| || || |||||| Sbjct 1148698 TGACGACCACCGAAGTATTCAGAGACTAGAGATTGAATCTTTGGGATACGAGTGGATCCA 1148639 Query 7145 CCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTT 7204 |||||||| || || |||| || || || ||||| | || || ||| Sbjct 1148638 CCGACCAAGACAATGTCATCGACCTTTTCAGTAGACATCTTAGCATCCTTGAGGACCTTT 1148579 Query 7205 TCGACAGGTTCCATA----CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 |||| || || || | || | || || | | | |||||| ||||| || Sbjct 1148578 GCGACTGGGTCGATGGTTCCCTTGAAGGCGGCAG--CGTTGAT--TTCCTCGAAACGAGC 1148523 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGT 7320 |||||| ||| | | ||| || | || | ||| || || | ||| | || || Sbjct 1148522 ACGGGTGATGTTGGCTTGGAAGTCGATACCAGAGAATAGAGAGTCGACTTCGACAGTGGT 1148463 Query 7321 TTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380 ||| | ||||| | |||| ||| || |||||||| || | || || |||||||| Sbjct 1148462 TTGAGTGACTGAAGAAAGAGTTCTCTTGGCACGCTCACAAGCAGATCTTAGACGACGAAC 1148403 Query 7381 GGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG 7440 ||||| | | ||| || || ||| | ||||||| || || | |||||| Sbjct 1148402 TGCACGAGCATCACCTCCCATTTCGACCTTGTTCTTACGTTCGAATTCCTTCTTGAAGTG 1148343 Query 7441 -TCGA-AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCT 7498 || | | |||| | | ||||| ||||| || |||||||| || || || || || || Sbjct 1148342 GTCTAGAAGAGTGTTG--TCGAAGTCTTCTCCTCCCAAGTGAGTGTCTCCGGCAGTGGCC 1148285 Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558 ||||| | || | ||| || ||||| || | || ||||| || ||||| || || Sbjct 1148284 TTGACGGCGAAAACACCACCAGTGATGTTCAATAGAGAGACATCGAAAGTACCTCCTCCG 1148225 Query 7559 AGGTCAAAAATGAGTACGTTCGTATC----GTCGTCTTTGTTCTTATCGAGACCGTACGC 7614 || || || ||||| |||||| | || | | ||| | ||||||||||| || Sbjct 1148224 AGATCGAAGATGAGGACGTTCTTCTCAGTAGAGGACTTGGAG----TCGAGACCGTAAGC 1148169 Query 7615 GATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGA 7651 || || || || ||||| || || || ||||| ||| Sbjct 1148168 AATGGCAGCGGCGGTTGGCTCGTTGATGATACGGAGA 1148132 >seq4 Length=1327562 Score = 95.1 bits (104), Expect = 2e-14 Identities = 173/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||| || ||||| || || || || || || || |||||| || | |||| Sbjct 781398 TCGAAATCTTCTCCTCCCAAATGAGTGTCTCCGGCAGTTGCCAAGACTTCGAATACACCT 781457 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||| ||| | | || |||||||| ||||| || || || || | | || | Sbjct 781458 TCTTCGATGGAAAGTAGAGAGACATCAAAAGTACCTCCTCCTAGATCGTAGACGATGA-- 781515 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || | | | || | ||||| ||||||||||| || || || || || |||||||| Sbjct 781516 TTTG-AGCTTCTCCACCTTTCTTGTCGAGACCGTAAGCAATGGCAGCTGCAGTTGGTTCG 781574 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | ||||||||| | || || |||||||| | | ||| || || ||||| || Sbjct 781575 TTTACGATACGAAGAACTGTAAGACCTGCAATAGTACCGGAATCCTTGGTGGCTTGACGC 781634 Query 7697 TGCGAATCGTT 7707 || | ||||| Sbjct 781635 TGAGCGTCGTT 781645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132299832920