Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq28 223 4e-53 >seq28 Length=226377 Score = 223 bits (246), Expect = 4e-53 Identities = 898/1393 (64%), Gaps = 45/1393 (3%) Strand=Plus/Plus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 ||||| ||||||| ||||| || || |||||||| || | || | | |||| Sbjct 216897 ACATGCTCATGCGTGTCGCCATTGGAATCCATGGAACCGACGTCGAAAAGGCCATCGAGA 216956 Query 111679 CATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTG 111738 | || || |||||| | |||| |||||| | ||||| ||||||||||||| Sbjct 216957 CTTATAACCTCATGTCCGAGAAGACTTTCACCCACGCTTCTCCAACTCTCTTCAACGCTG 217016 Query 111739 GTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCA 111798 | || || | |||||||| |||||| | | | | ||||| || || ||| Sbjct 217017 GAACTCCTCATTCTCAAATGTCTTCCTGTTTCTTGGTCACCATGAAGGACGACTCCATCG 217076 Query 111799 ATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCG 111858 | || || |||| |||||||| |||||| ||||| ||| || ||||| |||| Sbjct 217077 AAGGAATCTACGACACTCTCAAGACGTGTGCCATGATCTCCAAGACTGCAGGTGGAATCG 217136 Query 111859 GGATGCACATCCATGATGTCAGAGCCAACAAG-TCTCGTATTAGAGGTACAAATGGTCAA 111917 | | || |||| | | | | ||| | ||| ||| || || ||||| Sbjct 217137 GTCTCAACGTCCACAACATTCGTGG-AACTGGATCTTACATTGCTGGAACCAATGGATTC 217195 Query 111918 TCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAA 111977 || | ||||| |||| ||||| || || | ||| ||| || | || || | ||| Sbjct 217196 TCCAACGGTATCGTTCCCATGCTACGTGTCTACAACAACACTGCTAGATACGTCGATCAA 217255 Query 111978 GCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGAT 112031 | || ||||| ||| || | || |||| | ||||||||||| | || Sbjct 217256 GGAGGAAACAAGCGTCC--AGGTGCCTTTGCCA-TCTACTTGGAGCCATGGCATTCAGAC 217312 Query 112032 ATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCC-GCGA 112090 || | || ||| | || | ||| ||||| || | ||||| | | ||||| | || Sbjct 217313 GTCTTCGAATTCTTGGATCTACGTAAGAACCACGGAAAGGAGGAAGTTC-GTGCCAGAGA 217371 Query 112091 TCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAA 112150 || |||| |||||| ||||||||||| ||||||||||||||||| ||| ||| | | Sbjct 217372 ACTGTTCTACGCTCTTTGGATTCCAGACCTCTTCATGAAGAGAGTAGAGAAGAACGAGGA 217431 Query 112151 TTGGTCTCTCTTTTGTCC-AGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGT 112209 ||||||||| ||||||| || || || || |||||| | || | | || ||||| | Sbjct 217432 TTGGTCTCTACTTTGTCCTGGAGAATGC-CCAGGTCTCGCTGACGTCTACGGAGAGGAAT 217490 Query 112210 TTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTG 112269 | ||||| || ||||| |||||||| ||| || | || | || || |||| Sbjct 217491 TCGAAGCTCTTTACACCAAGTACGAATCCGAAGGTAGAGCCAAGAGAACCGTCAAAGCTC 217550 Query 112270 CCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTT 112329 | | ||| | || || | | |||||||||| ||||| | || || ||||||| Sbjct 217551 AAAAGCTTTGGTATGCCATCTTGGAAGCTCAAACCGAAACTGGAAATCCTTACATGCTTT 217610 Query 112330 ACAAAGACGCCTGTAACCA-AAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCC 112388 |||| |||| ||| || || ||||||||| || ||||| | || |||||| | || Sbjct 217611 ACAAGGACG-CTGCAAACAGAAAGAGTAACCAGAAGAACCTAGGAACCATCAAGTGCTCA 217669 Query 112389 AACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTC 112448 ||||| ||||| |||||| | |||| | | ||||| || || || ||| | Sbjct 217670 AACCTTTGTACTGAAATCATCGAATACAGTGCTCCGGATGAAGTAGCCGTCTGCAACTTG 217729 Query 112449 GCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAA 112508 || || |||||||| || | | | || | | || ||||| | || | ||| Sbjct 217730 GCTTCCATCGCTCTTCCAACCTTCATCGACGCTGCTACCAAGACCTACGACTTCGAACGT 217789 Query 112509 CTCCACGAAGTTACGAAAACTGTCA---CAAAAAACCTAAACAGAGTTATTGATAGAAAT 112565 |||||| | || | || |||| |||||| |||| | || || | || Sbjct 217790 CTCCACAAGGTCTCCAA---GGTCATTTGTGGAAACCTCAACAAGATCATCGACATCAAC 217846 Query 112566 TTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGT 112625 | ||||| || ||| |||||| || || | | || |||||||| || ||||| Sbjct 217847 TACTACCCTGTCGAGGAAGCTCGTCGTTCCAACTTCCGTCATCGTCCAATCGGAATCGGT 217906 Query 112626 GTCCAAGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTCCGACGAAG 112683 || |||||||| || |||| ||||| || | | | | | || || || |||| Sbjct 217907 GTTCAAGGTCTAGCTGATGCTTTCATGATCATGG--GTTATCCTTTCGACTCTCCAGAAG 217964 Query 112684 CGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTT 112743 | | |||| | | || || || || || |||||||||||| | || ||| Sbjct 217965 CTCGTAAGCTCAACGTCCAAATCTTCGAAACCATCTATCACGCCGCTTT---GGAACGTT 218021 Query 112744 CG---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCAC 112800 || || || || || | || || || || || | ||||| |||||| | Sbjct 218022 CGATCGAATTAGCTGAAATCGAAGGACCTTACTCTACTTACGAGGGAAGTCCAGCAAGTC 218081 Query 112801 AAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGA-- 112858 |||| | ||||||| || |||||| |||| || ||||| | ||||| Sbjct 218082 AAGGAGAACTTCAATACGACATGTGG---GGTGTCAC--TCCTTCA-GATCTTTGGGATT 218135 Query 112859 CGCTCTCAAGGAACGCATCAAGG----AGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 | ||| ||| ||| | | | | ||||| |||||| |||| | | || | Sbjct 218136 GGACTTCATTGAAGGCAAAGATGGCAAAACATGGTCTACGTAACTCTCTTCTTCTAGCTC 218195 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 |||||||||| ||||| || | |||||||||||| || |||||||| ||||| |||| Sbjct 218196 CAATGCCAACTGCCTCTACTTCTCAAATCTTGGGTTTCAACGAATGCTTCGAACCTTACA 218255 Query 112975 CGACGAACATCTA 112987 | | |||||||| Sbjct 218256 CTTCAAACATCTA 218268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741911165360