Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq28 250 3e-61 seq1 82.4 9e-11 >seq28 Length=226377 Score = 250 bits (276), Expect = 3e-61 Identities = 1107/1723 (64%), Gaps = 51/1723 (3%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| || ||||| ||| ||||| ||| | |||||| ||||| ||||||||| | Sbjct 218521 GTTCAAAGATTGAGATTGACAAATGAAAGCACCTCTATCAGCAGCCATATCGATGATAGA 218462 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619 ||| || ||||||||| ||||||||||| ||| |||||| ||| ||||| ||| Sbjct 218461 CTTCTGAGGAATTTCCCAAACAGTCTTGTATAAAGCCTTGATTCTATCTGGAAT-TCCTG 218403 Query 109620 G-ATGTTTTGAATAGAGCCACCA---GCCTTCACCATGAGATCCTTCATCTCTTTCGACC 109675 | | ||||||||| || |||||| || | | | || | ||||||| || || Sbjct 218402 GTACGTTTTGAATCGATCCACCATGAGCGATGATCCTG---TTCTTCATCGATTCATCCC 218346 Query 109676 AGAGACC------GACCTTTTTGAGATCGTCAACAAG-ATGCTTGTTGACCACGACAAAT 109728 | | ||| |||| || || ||||||| | | | |||| || ||| Sbjct 218345 ATAAACCTTGTTCGACCAATTC----TC-TCAACAACCAAGGAT--TGACGACTTGGAAT 218293 Query 109729 TCACCAGC-AAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATT 109787 || ||||| ||| | | || ||||||||| | ||||| |||||||| || || || Sbjct 218292 TCTCCAGCCAAGACT-CTACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAGCATTCGTT 218234 Query 109788 GTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCG 109847 | || | |||||| | ||| || || || ||||| ||||| | |||||| ||| || Sbjct 218233 GAAACCCAAGATTTGAGAAGTAGAGGCAGTTGGCATTGGAGCTAGAAGAAGAGAGTTACG 218174 Query 109848 GAGACCCTTCGTCTTTACCCGCT---CACGCATTGCGTCCCAATCATAACGACCACTAAA 109904 ||||| | || ||| || || | || || |||||| || || | | || Sbjct 218173 TAGACCAT--GT-TTTGCCATCTTTGCCTTCAATGAAGTCCAATCCCAAAGATC--TGAA 218119 Query 109905 TTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTT 109964 ||| |||| |||||| || ||||||| | || | | || ||| |||| Sbjct 218118 GG-AGTGACACC---CCACATGTCGTATTGAAGTTCTCCTTGACTTGCTGGACTTCCCTC 218063 Query 109965 GAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATG 110024 | || | ||| | || || | || || || ||| ||| || | || || || Sbjct 218062 GTAAGTAGAGTAAGGTCCTTCGATTTCAGCTAATTCGATCGAACGTTCCAAAGCGGCGTG 218003 Query 110025 ATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAG 110084 ||| || || || || || || | || | |||| ||| | ||||||| ||| Sbjct 218002 ATAGATGGTTTCGAAGATTTGGACGTTGAGCTTACGAGCTTCTGGAGAGTCGAAAGGATA 217943 Query 110085 ACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144 ||| | || || |||| |||||||| |||||||||| || || || ||||| Sbjct 217942 ACCCATGATCATGAAAGCATCAGCTAGACCTTGAACACCGATTCCGATTGGACGATGACG 217883 Query 110145 CATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204 | ||| || || ||||| || || ||||| ||||| |||||||| | ||||| Sbjct 217882 GAAGTTGGAACGACGAGCTTCCTCGACAGGGTAGTAGTTGATGTCGATGATCTTGTTGAG 217823 Query 110205 ATTCTTCGTCACAGT--CTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTC 110262 || || || | ||| | || | ||||| ||| | ||| | || || || Sbjct 217822 GTT--TCCACAAATGACCTTGGAGACCTTGTGGAGACGTTCGAAGTCGTAGGTCTTGGTA 217765 Query 110263 TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCT 110322 | | || | | || ||||| || || || | ||||| || | || || Sbjct 217764 GCAGCGTCGATGAAGGTTGGAAGAGCGATGGAAGCCAAGTTGCAGACGGCTACTTCATCC 217705 Query 110323 TTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTC 110382 | ||||||| | ||||| ||||| | ||| || | ||| ||| || | |||| Sbjct 217704 GGAGCACTGTATTCGATGATTTCAGTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTC 217645 Query 110383 TTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTC 110441 ||||| || | ||| ||||| || ||||| || |||||||| || | |||||||| Sbjct 217644 TTCTGGTTACTCTTTCTGTTTGCA-GCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTC 217586 Query 110442 CGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAG 110501 || || | | | ||||| | ||| | | || ||| ||| || || Sbjct 217585 GGTTTGAGCTTCCAAGATGGCATACCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCT 217526 Query 110502 ACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAG 110561 |||||| |||||||||||||| | | || ||||||| |||||| || |||| || Sbjct 217525 ACCTTCGGATTCGTACTTGGTGTAAAGAGCTTCGAATTCCTCTCCGTAGACGTCAGCGAG 217466 Query 110562 ACCCTTCGCCTTGTCG-GGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCA 110620 ||| | || || || ||||| | || ||||||| | || ||| || ||||||| Sbjct 217465 ACC-TGGGCATTCTCCAGGACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCA 217407 Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCAC 110680 |||| ||||| |||||||| | || |||| || || | | |||| | || || | | Sbjct 217406 TGAAGAGGTCTGGAATCCAAAGAGCGTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTC 217347 Query 110681 CTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA 110740 | ||||| ||||| ||||| || || | || || || |||||||| || | |||| Sbjct 217346 CGTGGTTCTTACGTAGATCCAAGAATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGA 217287 Query 110741 CAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGA 110797 || | || || ||| || | || | || || | || ||| ||| Sbjct 217286 TGGCAAAGGCACCTGGACGCTTGTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGT 217227 Query 110798 AGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACT 110857 |||| | ||||| |||| || || | ||| ||||| || || ||| || Sbjct 217226 AGACACGTAGCATGGGAACGATACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATC 217167 Query 110858 TATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTG 110917 | | ||||||||| ||||| | | ||| || ||||| || ||| || | Sbjct 217166 CAGTTCCACGAATGTTGTGGACGTTGAGACCGATTCCACCTGCAGTCTTGGAGATCATGG 217107 Query 110918 CACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGA 110976 ||||| ||| |||| || | || || || || || || || |||| ||| | | Sbjct 217106 CACACGTCT-TGAGAGTGTCGTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAG 217048 Query 110977 AAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGA 111036 || || |||||||| |||| | |||| ||||| || |||||||| || || | || || Sbjct 217047 AAACAGGAAGACATTTGAGAATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGG 216988 Query 111037 ATGAACAGACCT-TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACC 111095 |||| || | | | |||||| ||| || || |||| || || || | || Sbjct 216987 GTGAA-AGTCTTCTCGGACATGAGGTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCC 216929 Query 111096 GTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATC 111155 || || |||||||| || ||||||| ||| | |||||| |||| | |||||||| Sbjct 216928 ATGGATTCCAATGGCGACACGCATGAGCATGTGTTGAGGACGTTCGGCGACCTTTCCATT 216869 Query 111156 AACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAG 111198 | || |||||||| |||| || ||||||| ||| ||| Sbjct 216868 GATTCGTAGAAGGTAAGATCTCTCAAGAGTCTTGAAACCGAAG 216826 >seq1 Length=2409711 Score = 82.4 bits (90), Expect = 9e-11 Identities = 258/395 (65%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 167407 GGCATGTAAAAGTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCA 167466 |||||||| | || ||||| ||| |||||||||| ||| || |||| | ||| Sbjct 984345 GGCATGTACCATTCAGGTTCTATGCTTTGACCATCATCGGTCAAATAAGTGAGGAGAGCA 984286 Query 167467 TCATCTTTGGGATCGAAGAGCTTTCGAGCCTCCTTGGTAAGCTTCGTAAAGATGTACCTC 167526 || ||| | || ||| || ||| || || || || || || ||||| | Sbjct 984285 TCGTCTGCAGAATGGAACAGAGTTCTAGTGATGGGGGGAATGTTTGTGAAAATGTAACGA 984226 Query 167527 GTCTGAGACGCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGA 167586 | | | || || || || ||||| | || || ||||||||| ||| ||| Sbjct 984225 GCCGATGCAGCGTCTTTTCCTCCCATACCTCTGGTTCCGAATTGACCATTTGGAGATAGA 984166 Query 167587 AGATTGATGTTATTCGACCCCGTATAATCGTTGGCCA-ACTTGACGATCGTTTCAGCGAG 167645 | |||| ||| || || || | || | |||| || | ||||| |||| || || Sbjct 984165 ATGTTGACGTTGTTGGATCCACAGAAGTCTTGAGCCAGACCT-ACGATGGTTTGAGTCAG 984107 Query 167646 GGAAACTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAAC 167705 || ||||| || || |||||||| | |||| || || | ||||| || || || Sbjct 984106 AGAGACTTCACCATGATGGTAAGCGGAATGCTCAGAGACGTAACCAGCCAATTGAGCTAC 984047 Query 167706 CTTCATCTCATCTTTGAGATTCTTTTGGAAACAT--GAATACATAACCTTGCGTTGAGAA 167763 ||| |||||| |||| | || | | ||| ||| ||||| ||||| |||||| Sbjct 984046 CTTGATCTCAGCTTTCAACTTTCTCTTGAAGCATCCGAATAGG--ACCTTACGTTGACCG 983989 Query 167764 GGTTTGAGACCATCTGCCACGTGAGCAATTGAGCG 167798 ||||||||||||||| ||| || | ||| || || Sbjct 983988 GGTTTGAGACCATCTACCATGTTTGGAATGGAACG 983954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975536181400