Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq28 188 8e-43 >seq28 Length=226377 Score = 188 bits (208), Expect = 8e-43 Identities = 927/1459 (64%), Gaps = 35/1459 (2%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | ||||| ||||| |||||||| || |||||||||||| | || ||| Sbjct 218268 TAGATGTTTGAAGTGTAAGGTTCGAAGCATTCGTTGAAACCCAAGATTTGAGAAGTAGAG 218209 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTT----CCTTGATGCG 106050 || ||||||||||| || | | |||| |||||| ||||| | || | | ||| Sbjct 218208 GCAGTTGGCATTGGAGCTAGAAGAAGAGAGTTACGTAGACCATGTTTTGCCATCTTTGCC 218149 Query 106051 TTCCTTGAGAAC--ATCCCAGTCGTAGTTGAGCTTG-GTTTCACCTTCCCACATATCAAA 106107 ||| ||| | |||||| || | | | || ||| ||||||| || | Sbjct 218148 TTCAATGAAGTCCAATCCCA----AAGATCTGAAGGAGTGACAC---CCCACATGTCGTA 218096 Query 106108 TTGAAGCACCCCTTGGGACGTG--GGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCT 106165 |||||| | |||| ||| || ||| ||||| | || || | |||| | | Sbjct 218095 TTGAAGTTCTCCTT--GACTTGCTGGACTTCCCTCGTAAGTAGAGTAAGGTCCTTCGATT 218038 Query 106166 TCAGCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGC 106224 ||||| ||||| | | || |||| | |||||||| |||||||| ||||| | | Sbjct 218037 TCAGCTAATTCGATCGAACG-TTCCAAAGCGGCGTGATAGATGGTTTCGAAGATTTGGAC 217979 Query 106225 ATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGC 106284 || | || ||||| || || || | || | | || || |||| || Sbjct 217978 GTTGAGCTTACGAGCTTCTGGAGAGTCGAAAGGATAACCCATGATCATGAAAGCATCAGC 217919 Query 106285 GAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC 106344 |||||||||||||| | || || || | || || | || || || || ||| Sbjct 217918 TAGACCTTGAACACCGATTCCGATTGGACGATGACGGAAGTTGGAACGACGAGCTTCCTC 217859 Query 106345 AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 106404 || || || | || |||| |||| ||| || ||| || | ||| | || Sbjct 217858 GACAGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTCCACAAATGACCTTGGAGAC 217799 Query 106405 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGC 106464 | || || ||| | || | || || | | | || | ||||||| || Sbjct 217798 CTTGTGGAGACGTTCGAAGTCGTAGGTCTTGGTAGCAGCGTCGATGAAGGTTGGAAGAGC 217739 Query 106465 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 106524 ||| || ||||| ||||| || || |||||| | | |||| || | ||||| || Sbjct 217738 GATGGAAGCCAAGTTGCAGACGGCTACTTCATCCGGAGCACTGTATTCGATGATTTCAGT 217679 Query 106525 ACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG-TTGCACG 106583 ||| | ||| || | ||| || || || | ||||| |||||||||||| || ||||| | Sbjct 217678 ACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCTGGTTACTCTTTCTGTTTGCA-G 217620 Query 106584 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCC 106643 | |||||||| |||||||| || | || || || || || | | | || || | || Sbjct 217619 CGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTTGAGCTTCCAAGATGGCATACC 217560 Query 106644 ACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGA 106703 | | | ||| || | ||||| | || || | |||||||| ||||| | Sbjct 217559 AAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACCTTCGGATTCGTACTTGGTGTAAA 217500 Query 106704 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT-CTGGACAGAAA 106762 | ||||| || ||||| || |||| | ||||||||| || || | | ||||| | Sbjct 217499 GAGCTTCGAATTCCTCTCCGTAGACGTCAGCGAGACCTGG-GCATTCTCCAGGACAAAGT 217441 Query 106763 AGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGAT 106822 |||||||| | | || ||| || | ||||||||| |||||||||||||| || | Sbjct 217440 AGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAAGAGGTCTGGAATCCAAAGAGCG 217381 Query 106823 GAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAAC 106882 | || || ||||| ||| | || || | || ||||| |||| || | ||| Sbjct 217380 TAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTGGTTCTTACGTAGATCCAAGAAT 217321 Query 106883 TCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC--- 106939 || | || || | ||||||||||| | |||| || | | || | ||||| Sbjct 217320 TCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGCAAAGGCACC---TGGACGCTTG 217264 Query 106940 ---CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATA 106996 || |||||| || || | || ||| ||| | || || ||||| |||| ||| Sbjct 217263 TTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGACACGTAGCATGGGAACGATA 217204 Query 106997 CCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATG 107056 || | || ||||| || || ||| |||| | | | | | | |||| | Sbjct 217203 CCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGTTCCACGAATGTTGTGGACG 217144 Query 107057 TGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAG 107116 | | || || || || || ||| ||||| |||||| | | ||||| | ||| Sbjct 217143 TTGAGACCGATTCCACCTGCAGTCTTGGAGATCATGGCACACGTCTTGAGAGTGTCGTAG 217084 Query 107117 ATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTT 107176 || || | ||| ||||| ||||| ||| || | ||| || ||||| || | Sbjct 217083 ATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAAACAGGAAGACATTTGAGAATGA 217024 Query 107177 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTG 107236 || || ||||| |||||||| ||||| | ||||| |||| | | |||||| | Sbjct 217023 GGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGTGAAAGTCTTCTCGGACATGAGG 216964 Query 107237 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATA 107296 | || ||||| | | | || | ||| || ||||| || ||||| |||||||| Sbjct 216963 TTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATGGATTCCAATGGCGACACGCATG 216904 Query 107297 AACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT-AGCTCTTCTC 107355 | ||||| ||| || ||| || | |||| || ||| |||| | || || |||| Sbjct 216903 AGCATGTGTTGAGGACGTTCGGCGACCTTTCCATTGATTCGTAGAAGGTAAGATC-TCTC 216845 Query 107356 AAGGGTTTTGAGACCAAAG 107374 ||| || |||| ||| ||| Sbjct 216844 AAGAGTCTTGAAACCGAAG 216826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980335390120