Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq15 158 3e-33 seq4 158 3e-33 seq1 114 3e-20 seq6 107 4e-18 >seq15 Length=848729 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||| || || || |||||||||||| |||||||| || ||||| | ||| Sbjct 552188 GTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCTTCCAACTG 552129 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || ||||| | || ||||||||| ||||| || ||||| |||||||| || || Sbjct 552128 TTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGGATCTT 552069 Query 195057 TTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 |||||| || |||||||||| ||| | ||| || || ||||| | |||||| || Sbjct 552068 GGCCTTGACATTGTCAATGGTGTCACCGGA--TTCGACCTCTAGGGTGATCGTCTTACCG 552011 Query 195115 GTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| || || ||||| | |||| ||| Sbjct 552010 GTCAAGGTCTTGACGAAAATTTGCCTTT 551983 >seq4 Length=1327562 Score = 158 bits (174), Expect = 3e-33 Identities = 146/185 (79%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194956 TGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGT 195015 || || ||||| || | ||||||||| |||||||| || ||||| || || ||||| || Sbjct 1259031 TGGATGTTGTAGTCTGAAAGAGTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAGA 1259090 Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 ||||||||||| ||||| || ||||| || |||||||| ||| ||| ||||| || ||| Sbjct 1259091 CGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTGCCTTTACGTTGTCGATG 1259150 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 ||||| | ||||||||| || || | |||||||| || |||||||| ||||| | | Sbjct 1259151 GTGTCACCAGATTCCACTTCGAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAGATT 1259210 Query 195136 TGCAT 195140 ||||| Sbjct 1259211 TGCAT 1259215 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| ||||| || |||||||| ||||||||| | |||||| || ||||| | || Sbjct 1257754 TGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAAAGTTCTACCGTCTTCCAATTGT 1257813 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || |||||||| |||||||| || || ||||| || || ||||||||||| ||| Sbjct 1257814 TTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTCCTTGTCTTGAATCTTT 1257873 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||| ||||| || || | ||| ||||| | |||| |||||||| ||| Sbjct 1257874 GCCTTAACGTTATCAATAGTATCACTAGATTCGACTTCCAAAGTAATAGTCTTTCCGGTC 1257933 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| | |||||| Sbjct 1257934 AAAGTCTTGACGAAAATTTGCAT 1257956 Score = 138 bits (152), Expect = 3e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATC 194987 || || | ||||||||| || || ||||| || ||||| || | |||| ||||| || || Sbjct 1257973 AAGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCTGACAAG-GTTCTACCGTC 1258031 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||| |||||||| || | || |||||| || || || || ||||| ||||| Sbjct 1258032 TTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGGGTGGGATTCCTTCCTTGTC 1258091 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||||| |||||||| || ||||| || | ||| ||||| || || | || Sbjct 1258092 CTGAATTTTGGCTTTGACGTTGTCGATGGTATCTCCAGATTCGACTTCGAGAGTGATGGT 1258151 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||||||| || || || || | |||||| Sbjct 1258152 CTTTCCTGTCAAGGTCTTGACAAAGATTTGCAT 1258184 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194956 TGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGT 195015 || || ||||| || | || ||||| || ||||| | |||||||| |||||||| | | Sbjct 1258530 TGGATGTTGTAGTCTGAGAGGGTTCTTCCGTCTTCCAATTGCTTACCGGCGAAGATCAAT 1258589 Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 | |||||||| || |||||||||||||||||||| ||||| |||||| || |||||| Sbjct 1258590 CTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTGTCAATG 1258649 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 ||||| | || || || || || | |||||||| || | ||| |||||||| | Sbjct 1258650 GTGTCTCCAGACTCTACCTCTAGAGTGATAGTCTTTCCGGTAAGAGTCTTTACGAAGATC 1258709 Query 195136 TGCAT 195140 ||||| Sbjct 1258710 TGCAT 1258714 >seq1 Length=2409711 Score = 114 bits (126), Expect = 3e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || |||||||| || |||||||| ||||| || | | ||||| || ||||| || ||| Sbjct 640291 TGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGATAAGGTTCTACCGTCTTCTAGTTGC 640350 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| ||||||||||| || || ||||| ||||||||||||||||| || Sbjct 640351 TTTCCGGCAAAGATGAGTCGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTGAATCTTG 640410 Query 195058 TGCTTGAC 195065 |||||| Sbjct 640411 GCCTTGAC 640418 >seq6 Length=1288008 Score = 107 bits (118), Expect = 4e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 194974 AGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGA 195033 || ||||| |||||||| | ||||| ||||| || | ||| ||||||| ||||||||| Sbjct 105916 AGGGTTCTTCCATCTTCCAATTGCTTTCCTGCAAAAACAAGACGTTGTTTCTCTGGAGGA 105975 Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACT 195093 |||||||||||||||||||| || |||| || || || ||||| | | || Sbjct 105976 ATGCCTTCTTTGTCTTGAATCTTGCATTTGATGTAGTCGATAGTGTCTCCAGAGGCTGCT 106035 Query 195094 TCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTG 195137 || | ||||| | ||||| |||||| || || ||||| | ||| Sbjct 106036 TCCAAGGTAATCACCTTTCGTGTCAAGGTCTTGACGAAGAGTTG 106079 Score = 91.5 bits (100), Expect = 3e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| ||||| |||||||||||||||| ||||| || || |||||||| ||||| Sbjct 395286 CCGTCTTCTAGCTGTTTACCTGCGAAGATAATACGTTGCTGATCGGGAGGAATTCCTTCC 395345 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || |||||||| || |||||||| || || ||||| Sbjct 395346 TTATCTTGAATCTTGGCTTTGACGTTGTCGATCGTGTC 395383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480704440321