Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq28 168 8e-37 >seq28 Length=226377 Score = 168 bits (186), Expect = 8e-37 Identities = 596/929 (64%), Gaps = 10/929 (1%) Strand=Plus/Minus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 ||| || || || || | || || || ||||| |||| ||| | | |||| || || Sbjct 217744 AAGAGCGATGGAAGCCAAGTTGCAGACGGCTACTTCATCCGGAGCACTGTATTCGATGAT 217685 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995 ||||| ||| || || || ||||| || || | || | || ||| | |||| Sbjct 217684 TTCAGTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCTGGTTACTCTTTCTGTT 217625 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 ||||||||||||||||| |||| |||||||||| | |||| ||| | ||| | Sbjct 217624 TGCAGCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTTGAGCTTCCAAGATGGC 217565 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTA---GCTTTATTATCATGTTCGTATTT 48112 | ||||| | ||| || | | | ||| ||| || || |||||| || Sbjct 217564 ATACCAAAGCTTTTGAGCTTTGA---CGGTTCTCTTGGCTCTACCTTCGGATTCGTACTT 217508 Query 48113 AGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGG 48172 || || | || ||||| || || || || | | | | || || ||||| ||| Sbjct 217507 GGTGTAAAGAGCTTCGAATTCCTCTCCGTAGACGTCAGCGAGACCTGGGCATTCTCCAGG 217448 Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232 ||| | | ||||||||||| | || | |||||| |||| || | ||||| ||||| Sbjct 217447 ACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAAGAGGTCTGGAATCCA 217388 Query 48233 AAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTC 48292 |||||| || | || || | | | ||| || || || ||| | || || Sbjct 217387 AAGAGCGTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTGGTTCTTACGTAGATC 217328 Query 48293 AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCG 48352 | || || | | || | ||||||||| || || || || || | ||||||| || Sbjct 217327 CAAGAATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGCAAAGGCACCTGGACG 217268 Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412 || || ||||||||||| | ||||| ||||| ||||| || || | || ||| || || Sbjct 217267 CTTGTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGACACGTAGCATGGGAAC 217208 Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACT 48472 ||||| || || | ||||||||||| | ||| ||| |||| | | | || || Sbjct 217207 GATACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGTTCCACGAATGTTGTG 217148 Query 48473 AA--TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTA 48530 | ||| | ||| || |||||||| | || || || | |||||| || || || Sbjct 217147 GACGTTG--AGACCGATTCCACCTGCAGTCTTGGAGATCATGGCACACGTCTTGAGAGTG 217090 Query 48531 TCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGC 48590 || || |||||||| || || || |||| | | | ||||| ||||||||| Sbjct 217089 TCGTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAAACAGGAAGACATTTGA 217030 Query 48591 GGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGAT 48650 | |||| |||||| | || || | |||||||| || || | || ||||| || Sbjct 217029 GAATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGTGAAAGTCTTCTCGGAC 216970 Query 48651 AACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACA 48710 | | ||||| || || || | || | || | ||| || || || | ||| Sbjct 216969 ATGAGGTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATGGATTCCAATGGCGACA 216910 Query 48711 CGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGAT 48770 ||||| | ||| | |||||| | ||| | | || ||| ||| | ||| || ||| Sbjct 216909 CGCATGAGCATGTGTTGAGGACGTTCGGCGACCTTTCCATTGATTCGTAGAAGGTAAGAT 216850 Query 48771 TTTTCCAATGTTTTAAAACCAAAATAGTT 48799 | || | || || ||||| || |||| Sbjct 216849 CTCTCAAGAGTCTTGAAACCGAAGAAGTT 216821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108357339320