Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-23 seq1 109 4e-18 seq3 104 2e-16 >seq4 Length=1327562 Score = 127 bits (140), Expect = 2e-23 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315 ||||| || || | ||||||||| ||| || ||| |||||||| ||| | |||||| Sbjct 1257739 AGACGAAGAACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATC-GCTCAAAGTTCT 1257797 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| | ||||||||| ||||| ||||| | ||| |||||||| |||||||| || Sbjct 1257798 ACCGTCTTCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTC 1257857 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 || |||||||| ||| || || ||||| |||||| | || | | ||| | || Sbjct 1257858 CTTGTCTTGAATCTTTGCCTTAACGTTATCAATAGTATCACTA-GATTCGACTTCCAAAG 1257916 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| ||| || || || | ||| || ||||||||||||||| Sbjct 1257917 TAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATTTGCATA 1257957 Score = 111 bits (122), Expect = 1e-18 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || ||||| || | |||||||| |||||| ||||| ||||| ||||| || || | | Sbjct 1259034 ATGTTGTAGTCTGAAAGAGTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAGACGT 1259093 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 || || |||||||| || ||||| ||||||||||| ||| ||||| || || || Sbjct 1259094 TGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTGCCTTTACGTTGTCGATGGTG 1259153 Query 563413 TCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 ||| || | || ||||||||| | || || ||||| | |||||| ||||| ||||| Sbjct 1259154 TCA-CCAGATTCCACTTCGAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAGATTTG 1259212 Query 563472 CAT 563474 ||| Sbjct 1259213 CAT 1259215 Score = 93.3 bits (102), Expect = 3e-13 Identities = 120/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 552438 ATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTT 552497 |||||| | ||||| |||||| | | | || || || || || |||||||| | || Sbjct 780673 ATTCAAGTCTTTGAGGGAGAACGTTCAATGACCAAGGACAACAACCAACTTGGAAAGTTC 780614 Query 552498 -AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGA 552556 |||| | | ||||| ||||||||||||||||| || || |||||||| || || || Sbjct 780613 GAATTGACCAAC-ATTCCACCTGCTCCTCGTGGAGTTCCTCAGATTGAAGTCACCTTTGA 780555 Query 552557 TATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAA 552599 ||||||||||||| || |||| || ||||| |||||| Sbjct 780554 AGTCGATGCCAATGGTATCATGAAGGTTTCTGCTGCCGATAAA 780512 >seq1 Length=2409711 Score = 109 bits (120), Expect = 4e-18 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 || ||||| | |||||| ||| ||| || ||| |||||||| | || |||||| | Sbjct 336339 CGAAGTACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCA 336398 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 ||||| | ||| ||||| ||||| || | |||||| ||||| || ||||||||||| || Sbjct 336399 TCTTCCAATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTG 336458 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAAC 563438 ||||| ||||| || || || || || ||| || | | ||||| || | Sbjct 336459 TCTTGGATTTTGGCCTTGACATTGTCGATAGTGTCA-CCAGACTCAACCTCGAGGGTGAT 336517 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| ||||| || | || ||||||||||||||| || Sbjct 336518 AGTCTTACCCGTTAAGGTCTTAACGAAAATTTGCCTA 336554 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || ||||| || || | ||| || || ||| || ||| ||||| || | || ||| Sbjct 640273 CTAAGACGTAGGACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGATAAGGTT 640332 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 || ||||| ||||| ||||||||||| || |||| ||| ||||| || ||||| ||| Sbjct 640333 CTACCGTCTTCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGATCGGGTGGAATACCT 640392 Query 563374 TCTTTATCTTGAATTTT 563390 ||||| |||||||| || Sbjct 640393 TCTTTGTCTTGAATCTT 640409 Score = 89.7 bits (98), Expect = 4e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 ||| | |||||| |||| || || ||||| | | || |||||| | || || ||| Sbjct 1342037 TTTACTCCAGAAGAAATCTCTTCCATGGTCCTTCTCAAGATGAAAGAGACTGCTGAAGCT 1341978 Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 | | | | | || ||| | ||||| || || || || ||||| || || || || || Sbjct 1341977 TATCTAGATGAAACAGTCAAAGATGCTGTCATCACGGTCCCAGCGTACTTCAACGATTCT 1341918 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 ||||||||||| || || || |||||| || ||||| || ||||| | || || ||| Sbjct 1341917 CAACGTCAAGCAACCAAGGACGCTGGATTGATCGCTGGTCTCAATGTCATCCGGATCATC 1341858 Query 550496 AATGAACCTACTGCTGC 550512 | ||| || || ||||| Sbjct 1341857 AGTGAGCCAACAGCTGC 1341841 >seq3 Length=1594217 Score = 104 bits (114), Expect = 2e-16 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 |||||| | || || || |||||| | | || |||| | | || || || | | | Sbjct 738975 CCAGAAGAGATCTCTTCCATGGTTCTTCTAAAGATGAGAGAGACTGCTGAAGCCTATCTA 738916 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 ||| | ||| | |||||| || | ||||| ||||| || || || || || |||||| Sbjct 738915 GGTGGATCAGTCAAGGATGCCGTCGTCACTGTCCCAGCCTACTTCAACGATTCTCAACGT 738856 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 ||||| || || ||||||||| |||||||| || || || | ||||| ||||| ||| Sbjct 738855 CAAGCCACAAAGGATGCTGGAGTCATTGCTGGTCTCAACGTCATGCGTATCATCAACGAA 738796 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || ||||| ||||| | || || || || || || Sbjct 738795 CCAACTGCCGCTGCCATCGCTTACGGTCTAGACAA 738761 Score = 95.1 bits (104), Expect = 1e-13 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || ||| |||| ||||| || |||||| | |||||||||||||| | Sbjct 739643 AGCTGTCGGAATCGATCTAGGTACCACTTACTCTTGTGTCGCTGTTTGGCAAAATGACAG 739584 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATG 550100 ||| ||| | ||||| || || |||||||||||||| ||||| ||||||| Sbjct 739583 AGTCGAAGTCATTGCAAACGACCAAGGTAACAGAACCACTCCTTCTTATG 739534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029292668275870