Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq4 141 7e-29 seq1 125 6e-24 seq15 107 2e-18 >seq4 Length=1327562 Score = 141 bits (156), Expect = 7e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 ||||| || | || ||| | ||| ||||||||||| ||||| ||||| || ||||||||| Sbjct 1257727 TTTCCACCACGTAGACGAAGAACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCG 1257786 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | |||||| | || |||||||| || || ||||| || | ||| |||||||| || Sbjct 1257787 CTCAAAGTTCTACCGTCTTCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGT 1257846 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 ||||| || || || |||||||| ||| || || | || | ||| ||| | ||| Sbjct 1257847 GGAATTCCCTCCTTGTCTTGAATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCG 1257906 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGA 101479 ||||| | ||| | || || ||||| ||||| || || || || ||||| | | ||| Sbjct 1257907 ACTTCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATTTGCATACCTCCACGA 1257966 Query 101480 AGA 101482 ||| Sbjct 1257967 AGA 1257969 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | |||||| || || ||||| || ||||| ||||| || ||||| || | Sbjct 1257958 CCTCCACGAAGACGTAAGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCTGAC 1258017 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || || |||||||| ||||| || ||||| | ||||||||||| || Sbjct 1258018 AAGGTTCTACCGTCTTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGGGTGGG 1258077 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || |||||||| ||| || | || | || || | ||| ||| Sbjct 1258078 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTGTCGATGGTATCTCCAGATTCGACT 1258137 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||||| || || || || || || || ||||| || ||||| Sbjct 1258138 TCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTGACAAAGATTTGCAT 1258184 Score = 122 bits (134), Expect = 7e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 101285 TGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAA 101344 || || ||||| || | | |||||| |||| |||| |||||| || ||||| || | | Sbjct 1259031 TGGATGTTGTAGTCTGAAAGAGTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAGA 1259090 Query 101345 CGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACA 101404 || ||||| || || || || ||||| ||||||||||| ||| ||||| | || | Sbjct 1259091 CGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTGCCTTTACGTTGTCGATG 1259150 Query 101405 GTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATC 101464 |||||| | ||||||||| ||||||| || || || ||||||||||| || || || Sbjct 1259151 GTGTCACCAGATTCCACTTCGAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAGATT 1259210 Query 101465 TGCAT 101469 ||||| Sbjct 1259211 TGCAT 1259215 Score = 116 bits (128), Expect = 3e-21 Identities = 147/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 101285 TGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAA 101344 || || ||||| || | || ||||| | || |||||||||||||| || || ||||| Sbjct 1258530 TGGATGTTGTAGTCTGAGAGGGTTCTTCCGTCTTCCAATTGCTTACCGGCGAAGATCAAT 1258589 Query 101345 CGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACA 101404 | |||||| || || |||||||||||||| ||||| ||||| || ||| | || | Sbjct 1258590 CTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTGTCAATG 1258649 Query 101405 GTGT---CAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461 |||| ||||| || || || ||||||| || || ||||| | ||| ||||| || Sbjct 1258650 GTGTCTCCAGAC---TCTACCTCTAGAGTGATAGTCTTTCCGGTAAGAGTCTTTACGAAG 1258706 Query 101462 ATCTGCATGGTTACGCGAAGA 101482 |||||||| | | |||||| Sbjct 1258707 ATCTGCATACCTCCACGAAGA 1258727 >seq1 Length=2409711 Score = 125 bits (138), Expect = 6e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||| |||||||| ||||| || |||||||| | | ||||| |||| ||| Sbjct 336345 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCATCTTCC 336404 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || ||||| || || | |||||||| || ||||| ||||| || ||||| Sbjct 336405 AATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGG 336464 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| | || | ||||||| | || || || || |||| || || Sbjct 336465 ATTTTGGCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTGATAGTCTTA 336524 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGC 101467 || ||||| || || || || || ||| Sbjct 336525 CCCGTTAAGGTCTTAACGAAAATTTGC 336551 Score = 109 bits (120), Expect = 4e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | || ||||| || || || ||||| |||||||| || || |||||||| | Sbjct 640740 TTCCACCACGTAGACGTAGTACCAAGTGCAGGGTTGATTCTTTCTGGATGTTGTAATCAG 640799 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| || |||| ||||||||||| || ||||| || | ||| |||||||| || | Sbjct 640800 ACAGAGTCCTACCATCCTCCAATTGCTTTCCAGCAAAGATTAGACGTTGTTGATCCGGTG 640859 Query 101361 GAATGCCTTCTTTATCTTGAATTTT 101385 | || ||||| || ||||| ||||| Sbjct 640860 GGATTCCTTCCTTGTCTTGGATTTT 640884 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||| ||||| | ||||| || ||||| || || ||||| ||||| || ||||| || | Sbjct 640266 TCCACCTCTAAGACGTAGGACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGA 640325 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | ||||| | || || | |||||| || ||||| || | || ||||||||||| || Sbjct 640326 TAAGGTTCTACCGTCTTCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGATCGGGTGG 640385 Query 101362 AATGCCTTCTTTATCTTGAATTTT 101385 ||| |||||||| |||||||| || Sbjct 640386 AATACCTTCTTTGTCTTGAATCTT 640409 >seq15 Length=848729 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || ||||| || || |||||||||||| | |||||| | || ||| Sbjct 552193 ACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCTTCC 552134 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || || ||||| ||||| ||||| | ||||| ||||| || || ||||| || ||||| Sbjct 552133 AACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGG 552074 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | |||||| | ||| || || || |||| ||| || Sbjct 552073 ATCTTGGCCTTGACATTGTCAATGGTGTCACCGGATTCGACCTCTAGGGTGATCGTCTTA 552014 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGC 101467 ||||| || || || || || || ||| Sbjct 552013 CCGGTCAAGGTCTTGACGAAAATTTGC 551987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278095732491