Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq4 93.3 4e-14 >seq1 Length=2409711 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 28556 GCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCAGA 28615 |||||| || || || || ||||||||||| || || ||| ||| || || || Sbjct 336551 GCAAATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGA 336492 Query 28616 GACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACA 28675 || | | | || ||||| |||||| ||||| || ||| | || ||||||||| Sbjct 336491 CACTATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACA 336432 Query 28676 GAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACAT 28735 ||| | |||||||| || || |||||||||||| | ||| | | ||||| ||||| Sbjct 336431 AAGATTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGGATTACAACAT 336372 Query 28736 TCAAAAAGAATCTACTCTGCACATGGTA 28763 |||||| ||||||||||| || ||||| Sbjct 336371 TCAAAAGGAATCTACTCTTCATTTGGTA 336344 >seq4 Length=1327562 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| |||||| | || |||||||| | ||||||||||| || |||||||||||| Sbjct 1257863 GACAAGGAGGGAATTCCACCTGATCAACAACGTCTTATCTTTGCTGGAAAACAATTGGAA 1257804 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || |||| || |||||| ||||||||||| ||||| || || || |||| Sbjct 1257803 GACGGTAGAACTTTGAGCGATTACAACATTCAAAAGGAATCCACCCTTCATTTGGT 1257748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425404473368877