Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01]
63 sequences; 27,756,302 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq4 150 1e-30
seq1 125 5e-23
seq3 105 4e-17
seq15 104 2e-16
seq6 100 2e-15
seq12 91.5 1e-12
>seq4
Length=1327562
Score = 150 bits (166), Expect = 1e-30
Identities = 169/221 (76%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609
||| ||||| || || | |||||| || ||| || || || ||||| ||| | ||
Sbjct 1257735 ACGTAGACGAAGAACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATC-GCTCAAAG 1257793
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
|||| ||||| | ||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 1257794 TTCTACCGTCTTCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTC 1257853
Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCA 480728
| |||||||||||||||||| || || |||||||||||| | | | | || ||
Sbjct 1257854 CCTCCTTGTCTTGAATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCGACTTCCA 1257913
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| |||||||| || ||||| | |||||| |||||||||||
Sbjct 1257914 A-AGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATTTG 1257953
Score = 107 bits (118), Expect = 1e-17
Identities = 74/84 (88%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665
|||||||| |||||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct 1259049 AGAGTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGG 1259108
Query 480666 ATTCCTTCCTTGTCTTGAATCTTT 480689
|| |||||||| ||||||||||||
Sbjct 1259109 ATACCTTCCTTATCTTGAATCTTT 1259132
>seq1
Length=2409711
Score = 125 bits (138), Expect = 5e-23
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 480558 CGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTA 480617
|| ||||| | |||||| ||| ||| || || || ||||| | || ||||| |
Sbjct 336339 CGAAGTACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCA 336398
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
||||| | ||||||||||||||| || | | ||||||||| || |||||||||||||||
Sbjct 336399 TCTTCCAATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTG 336458
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA-GTGTGTGAAGTTTCAAGGGTAAT 480736
||||| || || |||||| || ||||| ||| | | || || ||||| ||
Sbjct 336459 TCTTGGATTTTGGCCTTGACATTGTCGATAGTGTCACCAGACTCAA-CCTCGAGGGTGAT 336517
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||| ||||| || | |||||||||||||||||
Sbjct 336518 AGTCTTACCCGTTAAGGTCTTAACGAAAATTTG 336550
Score = 113 bits (124), Expect = 3e-19
Identities = 513/797 (64%), Gaps = 26/797 (3%)
Strand=Plus/Minus
Query 475363 AGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCA 475420
||||||||| ||||| | || | || || ||||| ||||| || | | || ||||
Sbjct 1341717 AGCAACAGCCGGAGACACTCACCAGGGAGGAGAAGACTTTGACAACCGTTTAGTCGATCA 1341658
Query 475421 TGGTGTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAAC-ATCTGCTAAAGC 475479
| |||| |||| || ||| | || || || || || || || | || || ||
Sbjct 1341657 C--TTTGTTCAAGAGTTTAAGCGCAAGAACAAGAAAGACCTCTCTACCAGCT-CTCGTGC 1341601
Query 475480 ATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCA 475539
| | |||||| || | | ||||||||| ||| |||| ||||| | | | ||||
Sbjct 1341600 GCTGATCCGTCTTCGAGCCGGCTGTGAACGTCTCAAGAGAGCCCTTTCCACGGTTGCTCA 1341541
Query 475540 AACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGAT-TATAATACTCTTATTACAA 475598
| || || | ||| | |||| ||| ||||||||| |||| | || ||||| | ||
Sbjct 1341540 ATCTTCTTTGGAAATCGATTGTCTATTTGAAGGAGCTGATCTCTACACCTCTT-TGACTC 1341482
Query 475599 GGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAAC 475658
| | |||||| || | ||| |||||||||| || || || ||| | || ||
Sbjct 1341481 GTCCACGATTTGAGGAGCTCTGTGGAGATCTCTTTACGAAGACCATAGAAACGGTAGAGA 1341422
Query 475659 AAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAG 475718
|||| || |||||| | | | ||||| | ||||||| || | |||||||
Sbjct 1341421 AAGTGCTTCAAGATTCGAGAATCGACAAGGGGTCGATTGATGAAATCGTCTTGGTAGGAG 1341362
Query 475719 GTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTT--AATGGTAAAAA 475776
|||| || | ||||||||| | | || | || || || || | ||||||| | |
Sbjct 1341361 GTTCTACTCGTATTCCAAAAGTTCAAAAACTTCT--CAGCAACTTCTTCAATGGTAGAGA 1341304
Query 475777 GTTAAATGAAAGT--GTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCA 475834
|| |||| || ||||| || ||||| ||||| | ||||||||||| || ||
Sbjct 1341303 ACCCAAC--AAGTCAGTCAATCCAGACGAAGCCGTTGCCTTCGGAGCTGCTGTTCAGGCC 1341246
Query 475835 GCTATTTTATCAGGTCA-ATCA-GACGAGAAACTAA---ATAATATTGTACTTGTTGACG 475889
|| ||| | || ||| | | || || || | | || | | |||| || ||| |
Sbjct 1341245 GCCATTCTCTCGGGTGATACCACGAAGAAGATCCAAGATCTCAAATTG-AC----TGATG 1341191
Query 475890 TAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACA 475949
|| |||| | ||||| || || | | || || ||| | || | | || || |
Sbjct 1341190 TAGCTCCTTTGTCATTGGGCATTAACATCACAGGGGGAATTTTCTCTCCTATCATCGAGA 1341131
Query 475950 GAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAA 476009
|||||||| |||||| ||| ||| || | || |||| || | || ||||
Sbjct 1341130 GAAATACTGTCATCCCAGTCAAGAAAACAGCAAATTTCACCACAGATGTCAACAACCAAA 1341071
Query 476010 CAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAAC 476069
||| ||| | || | | | ||||| || | || || ||||| |||||| |
Sbjct 1341070 CAAGTGTGGTCTACCTAGTGTACGAAGGAGAGCGTCCTTTGACCAAAGACAATAACTTTC 1341011
Query 476070 TTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAG 476129
| || | |||| || | || ||| |||||||||| || | ||||| || ||||
Sbjct 1341010 TAGGGAAATTTACGCTCAACGGGATTGCTCCTGCTCCTCGATGTGTTCCCTCGATGGAAG 1340951
Query 476130 TTACTTTTGATATTGAT 476146
| ||||| || ||||||
Sbjct 1340950 TCACTTTCGAAATTGAT 1340934
Score = 107 bits (118), Expect = 1e-17
Identities = 249/368 (68%), Gaps = 12/368 (3%)
Strand=Plus/Minus
Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574
|||||||| || | | ||||| || || || | ||| | ||||||| | || |||
Sbjct 1342175 TTTGATGCGAAGCGTCTCATTGGGCGAAAATTCGCAGATGCTGATGTCCAAGCAGACATG 1342116
Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AATAC 474632
|||||||| || || ||| || | |||||| ||| | || | | |||||
Sbjct 1342115 AAACATTGGCCATTCAAAGTGGTAGACAAAGGTGGTCTTCCAAACATCAAGGTTGAATAC 1342056
Query 474633 ACGCAGGTGAAACTAA-ACAATTTT-CACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690
| ||| || || | | |||| | || ||| |||| ||||| ||||| | |||
Sbjct 1342055 AA--AGG--AACGGAAGAGACTTTTACTCCAGAAGAAATCTCTTCCATGGTCCTTCTCAA 1342000
Query 474691 AATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748
|||||| | || || |||| ||||| | || ||| | ||||| || || ||
Sbjct 1341999 GATGAAAGAGACTGCTGAAGCT--TATCTAGATGAAACAGTCAAAGATGCTGTCATCACG 1341942
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
|| ||||| || || || |||||||||||||||||||| || || || ||| || ||
Sbjct 1341941 GTCCCAGCGTACTTCAACGATTCTCAACGTCAAGCAACCAAGGACGCTGGATTGATCGCT 1341882
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
||||| ||||| | || || || | ||| |||||||| || | |||||| ||| |
Sbjct 1341881 GGTCTCAATGTCATCCGGATCATCAGTGAGCCAACAGCTGCATCCATTGCTTTCGGTTTG 1341822
Query 474869 GATAAGAA 474876
|| |||||
Sbjct 1341821 GAAAAGAA 1341814
Score = 104 bits (114), Expect = 2e-16
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| ||||| | || || || |||||| | || ||||||| |||||
Sbjct 640747 ACGTAGACGTAGTACCAAGTGCAGGGTTGATTCTTTCTGGATGTTGTAATCAGACAGAGT 640806
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| ||| || | ||||||||||||||| || |||||||||||||| || || |||||
Sbjct 640807 CCTACCATCCTCCAATTGCTTTCCAGCAAAGATTAGACGTTGTTGATCCGGTGGGATTCC 640866
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGAC 480697
|||||||||||| || || ||||||
Sbjct 640867 TTCCTTGTCTTGGATTTTGGCTTTGAC 640893
Score = 91.5 bits (100), Expect = 1e-12
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 480554 AAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCT 480613
|||||| || || | ||| || || ||| || || || || || | || |||||
Sbjct 640275 AAGACGTAGGACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGATAAGGTTCT 640334
Query 480614 GTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTC 480673
||||| ||||||||||| ||||| || || ||||||||||| || ||||| |||||
Sbjct 640335 ACCGTCTTCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGATCGGGTGGAATACCTTC 640394
Query 480674 CTTGTCTTGAATCTT 480688
||||||||||||||
Sbjct 640395 TTTGTCTTGAATCTT 640409
Score = 86.0 bits (94), Expect = 4e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 356451 TTTTCCTTTTAATGGGAAAATACCATAATAATCTCTTCCGACAACATTTAATCCAGACAT 356510
|||||| ||| ||||| | ||||||| ||||||||||| | | || || || |
Sbjct 983109 TTTTCCACGTAAAGGGAAGACTCCATAATTGTCTCTTCCGACTTCGGTCAAACCTGAGAC 983050
Query 356511 AGCAAATGCTTTAGCTGAATCTCCTTCAGTAAGAATTAAAGTACATTTATATCCTTCTTT 356570
||| || ||||| || ||||||||||| || ||||| | |||||||| | ||||||
Sbjct 983049 AGCCAAAGCTTTGGCGGAATCTCCTTCGGTGAGAATCAGAGTACATTCAGATCCTTTACG 982990
Query 356571 TGTTCCAGCTTTATGAGCAT 356590
|||||||| || | ||||
Sbjct 982989 AGTTCCAGCATTGTTGGCAT 982970
>seq3
Length=1594217
Score = 105 bits (116), Expect = 4e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793
||||| || | ||||| ||||| || || || ||||||||||||||||| || || |||
Sbjct 738900 GATGCCGTCGTCACTGTCCCAGCCTACTTCAACGATTCTCAACGTCAAGCCACAAAGGAT 738841
Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853
|| ||| ||||| ||||| || || | ||||| || || |||||||| || || ||
Sbjct 738840 GCTGGAGTCATTGCTGGTCTCAACGTCATGCGTATCATCAACGAACCAACTGCCGCTGCC 738781
Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876
| ||||| ||||| || |||||
Sbjct 738780 ATCGCTTACGGTCTAGACAAGAA 738758
Score = 91.5 bits (100), Expect = 1e-12
Identities = 82/103 (80%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394
|| || ||| |||| || |||||| |||||| |||||||||||||||| | ||| |||
Sbjct 739636 GGAATCGATCTAGGTACCACTTACTCTTGTGTCGCTGTTTGGCAAAATGACAGAGTCGAA 739577
Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATG 474437
| ||||| || ||||||||||| ||||| || || || ||||
Sbjct 739576 GTCATTGCAAACGACCAAGGTAACAGAACCACTCCTTCTTATG 739534
>seq15
Length=848729
Score = 104 bits (114), Expect = 2e-16
Identities = 99/127 (78%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 474738 CAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGG 474797
|||| || ||||| ||||| || || || ||||| || |||||||| || || ||||| |
Sbjct 516188 CAGTCATCACTGTCCCAGCCTACTTCAACGATTCCCAGCGTCAAGCCACCAAGGATGCAG 516129
Query 474798 GAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857
| | |||||||||||| | || ||||| | || || ||||||||||| ||||| || |
Sbjct 516128 GTACAATTGCAGGTCTAGACGTCCTACGTGTCATCAACGAACCAACAGCCGCCGCTCTAG 516069
Query 474858 CTTATGG 474864
|||| ||
Sbjct 516068 CTTACGG 516062
Score = 98.7 bits (108), Expect = 6e-15
Identities = 130/178 (73%), Gaps = 2/178 (1%)
Strand=Plus/Minus
Query 480593 ATTATAATCAGCT-AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTT 480651
||| ||||| ||| |||||||| ||||| | || || |||||||| || | | ||
Sbjct 552164 ATTGTAATC-GCTCAGAGTTCTACCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTTT 552106
Query 480652 GTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTAT 480711
|||| || ||||| ||||||||||||||||| ||||| |||||| ||||| || |
Sbjct 552105 GTTGGTCGGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGT 552046
Query 480712 CAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| | | || ||||| || || |||||||| | ||||| |||||||||||
Sbjct 552045 CACCGGATTCGACCTCTAGGGTGATCGTCTTACCGGTCAAGGTCTTGACGAAAATTTG 551988
>seq6
Length=1288008
Score = 100 bits (110), Expect = 2e-15
Identities = 132/182 (73%), Gaps = 1/182 (1%)
Strand=Plus/Plus
Query 480588 GAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGA 480647
||||| ||| | || | |||||||| || ||||| | |||||||| ||| | || |||
Sbjct 17772 GAAAC-TTACAGTCTTCCAGAGTTCTATTGTCTTCCAACTGCTTTCCTGCATAGATCAGA 17830
Query 480648 CGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATA 480707
|||||||| ||||| || || ||||| | | ||||||||| |||| | || |||
Sbjct 17831 CGTTGTTGGTCAGGTGGGATACCTTCAATCTTTTGAATCTTGAGTTTTGTATCTGGTATA 17890
Query 480708 GTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATT 480767
| ||| | | | | ||| | ||||| ||||| || ||||||||||| ||||| ||
Sbjct 17891 GAATCCATTGGATAGGATTCGATTGTAATGGTTTTGCCCGTGAGAGTCTTGACGAAGATC 17950
Query 480768 TG 480769
||
Sbjct 17951 TG 17952
Score = 93.3 bits (102), Expect = 3e-13
Identities = 75/91 (82%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665
|| ||||| |||||| | ||||||||| ||||||| ||||||||||| || ||||||
Sbjct 105916 AGGGTTCTTCCATCTTCCAATTGCTTTCCTGCAAAAACAAGACGTTGTTTCTCTGGAGGA 105975
Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGA 480696
|| ||||| |||||||||||||| |||||
Sbjct 105976 ATGCCTTCTTTGTCTTGAATCTTGCATTTGA 106006
Score = 86.0 bits (94), Expect = 4e-11
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| | ||| |||||| |||| ||||||||||||||||| ||||||| |||||| |
Sbjct 299222 ATCTTCCAATTGTTTTCCACCAAAGATAAGACGTTGTTGATCTGGAGGAACTCCTTCTCT 299281
Query 480677 GTCTTGAATC 480686
||||||||||
Sbjct 299282 GTCTTGAATC 299291
>seq12
Length=1121745
Score = 91.5 bits (100), Expect = 1e-12
Identities = 123/169 (73%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 330988 GGATTCCATAAATTAATAATAATTCTTCTATCTGTCGGATTATT-TTTAATTGCTTCGAT 331046
|||||||| | | ||||| ||||||||||| || || || | |||| || | | |
Sbjct 391498 GGATTCCAAGCACTCATAATGATTCTTCTATCAGTAGGGTTTTCCTTTATTTTCCTA-AC 391556
Query 331047 ACAtttttttAATTGATCAATTCCTTGCCCGCTGTAATCTTTTTTACAATTTTCATATGT 331106
||||| |||||||| | ||||| || || ||||| | | ||||| |||||| |
Sbjct 391557 ACATTCCGCCAATTGATCCACTCCTTTGCCACTATAATCCGTATCACAATCCTCATATTT 391616
Query 331107 TGCACCAAAATATCTCATTTGGAAACCATATCCAGGACCTATATCACCT 331155
||||| |||| |||| |||||||||||| | ||||||| ||| |||
Sbjct 391617 AGCACCGAAATGTCTCCATTGGAAACCATAAACTGGACCTAAATCCCCT 391665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268176497624324
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |