Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4 150 1e-30 seq1 125 5e-23 seq3 105 4e-17 seq15 104 2e-16 seq6 100 2e-15 seq12 91.5 1e-12 >seq4 Length=1327562 Score = 150 bits (166), Expect = 1e-30 Identities = 169/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| ||||| || || | |||||| || ||| || || || ||||| ||| | || Sbjct 1257735 ACGTAGACGAAGAACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATC-GCTCAAAG 1257793 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 |||| ||||| | ||| ||||||||||| |||||||||||||||||||| ||||||| Sbjct 1257794 TTCTACCGTCTTCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTC 1257853 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCA 480728 | |||||||||||||||||| || || |||||||||||| | | | | || || Sbjct 1257854 CCTCCTTGTCTTGAATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCGACTTCCA 1257913 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | |||||||| || ||||| | |||||| ||||||||||| Sbjct 1257914 A-AGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATTTG 1257953 Score = 107 bits (118), Expect = 1e-17 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 |||||||| |||||| ||||||||||||||||| || ||||||||||| |||||||| Sbjct 1259049 AGAGTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGG 1259108 Query 480666 ATTCCTTCCTTGTCTTGAATCTTT 480689 || |||||||| |||||||||||| Sbjct 1259109 ATACCTTCCTTATCTTGAATCTTT 1259132 >seq1 Length=2409711 Score = 125 bits (138), Expect = 5e-23 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 480558 CGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTA 480617 || ||||| | |||||| ||| ||| || || || ||||| | || ||||| | Sbjct 336339 CGAAGTACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCA 336398 Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| | ||||||||||||||| || | | ||||||||| || ||||||||||||||| Sbjct 336399 TCTTCCAATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTG 336458 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA-GTGTGTGAAGTTTCAAGGGTAAT 480736 ||||| || || |||||| || ||||| ||| | | || || ||||| || Sbjct 336459 TCTTGGATTTTGGCCTTGACATTGTCGATAGTGTCACCAGACTCAA-CCTCGAGGGTGAT 336517 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| ||||| || | ||||||||||||||||| Sbjct 336518 AGTCTTACCCGTTAAGGTCTTAACGAAAATTTG 336550 Score = 113 bits (124), Expect = 3e-19 Identities = 513/797 (64%), Gaps = 26/797 (3%) Strand=Plus/Minus Query 475363 AGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCA 475420 ||||||||| ||||| | || | || || ||||| ||||| || | | || |||| Sbjct 1341717 AGCAACAGCCGGAGACACTCACCAGGGAGGAGAAGACTTTGACAACCGTTTAGTCGATCA 1341658 Query 475421 TGGTGTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAAC-ATCTGCTAAAGC 475479 | |||| |||| || ||| | || || || || || || || | || || || Sbjct 1341657 C--TTTGTTCAAGAGTTTAAGCGCAAGAACAAGAAAGACCTCTCTACCAGCT-CTCGTGC 1341601 Query 475480 ATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCA 475539 | | |||||| || | | ||||||||| ||| |||| ||||| | | | |||| Sbjct 1341600 GCTGATCCGTCTTCGAGCCGGCTGTGAACGTCTCAAGAGAGCCCTTTCCACGGTTGCTCA 1341541 Query 475540 AACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGAT-TATAATACTCTTATTACAA 475598 | || || | ||| | |||| ||| ||||||||| |||| | || ||||| | || Sbjct 1341540 ATCTTCTTTGGAAATCGATTGTCTATTTGAAGGAGCTGATCTCTACACCTCTT-TGACTC 1341482 Query 475599 GGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAAC 475658 | | |||||| || | ||| |||||||||| || || || ||| | || || Sbjct 1341481 GTCCACGATTTGAGGAGCTCTGTGGAGATCTCTTTACGAAGACCATAGAAACGGTAGAGA 1341422 Query 475659 AAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAG 475718 |||| || |||||| | | | ||||| | ||||||| || | ||||||| Sbjct 1341421 AAGTGCTTCAAGATTCGAGAATCGACAAGGGGTCGATTGATGAAATCGTCTTGGTAGGAG 1341362 Query 475719 GTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTT--AATGGTAAAAA 475776 |||| || | ||||||||| | | || | || || || || | ||||||| | | Sbjct 1341361 GTTCTACTCGTATTCCAAAAGTTCAAAAACTTCT--CAGCAACTTCTTCAATGGTAGAGA 1341304 Query 475777 GTTAAATGAAAGT--GTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCA 475834 || |||| || ||||| || ||||| ||||| | ||||||||||| || || Sbjct 1341303 ACCCAAC--AAGTCAGTCAATCCAGACGAAGCCGTTGCCTTCGGAGCTGCTGTTCAGGCC 1341246 Query 475835 GCTATTTTATCAGGTCA-ATCA-GACGAGAAACTAA---ATAATATTGTACTTGTTGACG 475889 || ||| | || ||| | | || || || | | || | | |||| || ||| | Sbjct 1341245 GCCATTCTCTCGGGTGATACCACGAAGAAGATCCAAGATCTCAAATTG-AC----TGATG 1341191 Query 475890 TAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACA 475949 || |||| | ||||| || || | | || || ||| | || | | || || | Sbjct 1341190 TAGCTCCTTTGTCATTGGGCATTAACATCACAGGGGGAATTTTCTCTCCTATCATCGAGA 1341131 Query 475950 GAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAA 476009 |||||||| |||||| ||| ||| || | || |||| || | || |||| Sbjct 1341130 GAAATACTGTCATCCCAGTCAAGAAAACAGCAAATTTCACCACAGATGTCAACAACCAAA 1341071 Query 476010 CAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAAC 476069 ||| ||| | || | | | ||||| || | || || ||||| |||||| | Sbjct 1341070 CAAGTGTGGTCTACCTAGTGTACGAAGGAGAGCGTCCTTTGACCAAAGACAATAACTTTC 1341011 Query 476070 TTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAG 476129 | || | |||| || | || ||| |||||||||| || | ||||| || |||| Sbjct 1341010 TAGGGAAATTTACGCTCAACGGGATTGCTCCTGCTCCTCGATGTGTTCCCTCGATGGAAG 1340951 Query 476130 TTACTTTTGATATTGAT 476146 | ||||| || |||||| Sbjct 1340950 TCACTTTCGAAATTGAT 1340934 Score = 107 bits (118), Expect = 1e-17 Identities = 249/368 (68%), Gaps = 12/368 (3%) Strand=Plus/Minus Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 |||||||| || | | ||||| || || || | ||| | ||||||| | || ||| Sbjct 1342175 TTTGATGCGAAGCGTCTCATTGGGCGAAAATTCGCAGATGCTGATGTCCAAGCAGACATG 1342116 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AATAC 474632 |||||||| || || ||| || | |||||| ||| | || | | ||||| Sbjct 1342115 AAACATTGGCCATTCAAAGTGGTAGACAAAGGTGGTCTTCCAAACATCAAGGTTGAATAC 1342056 Query 474633 ACGCAGGTGAAACTAA-ACAATTTT-CACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 | ||| || || | | |||| | || ||| |||| ||||| ||||| | ||| Sbjct 1342055 AA--AGG--AACGGAAGAGACTTTTACTCCAGAAGAAATCTCTTCCATGGTCCTTCTCAA 1342000 Query 474691 AATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 |||||| | || || |||| ||||| | || ||| | ||||| || || || Sbjct 1341999 GATGAAAGAGACTGCTGAAGCT--TATCTAGATGAAACAGTCAAAGATGCTGTCATCACG 1341942 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || ||||| || || || |||||||||||||||||||| || || || ||| || || Sbjct 1341941 GTCCCAGCGTACTTCAACGATTCTCAACGTCAAGCAACCAAGGACGCTGGATTGATCGCT 1341882 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| ||||| | || || || | ||| |||||||| || | |||||| ||| | Sbjct 1341881 GGTCTCAATGTCATCCGGATCATCAGTGAGCCAACAGCTGCATCCATTGCTTTCGGTTTG 1341822 Query 474869 GATAAGAA 474876 || ||||| Sbjct 1341821 GAAAAGAA 1341814 Score = 104 bits (114), Expect = 2e-16 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| ||||| | || || || |||||| | || ||||||| ||||| Sbjct 640747 ACGTAGACGTAGTACCAAGTGCAGGGTTGATTCTTTCTGGATGTTGTAATCAGACAGAGT 640806 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||| || | ||||||||||||||| || |||||||||||||| || || ||||| Sbjct 640807 CCTACCATCCTCCAATTGCTTTCCAGCAAAGATTAGACGTTGTTGATCCGGTGGGATTCC 640866 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGAC 480697 |||||||||||| || || |||||| Sbjct 640867 TTCCTTGTCTTGGATTTTGGCTTTGAC 640893 Score = 91.5 bits (100), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 480554 AAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCT 480613 |||||| || || | ||| || || ||| || || || || || | || ||||| Sbjct 640275 AAGACGTAGGACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGATAAGGTTCT 640334 Query 480614 GTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTC 480673 ||||| ||||||||||| ||||| || || ||||||||||| || ||||| ||||| Sbjct 640335 ACCGTCTTCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGATCGGGTGGAATACCTTC 640394 Query 480674 CTTGTCTTGAATCTT 480688 |||||||||||||| Sbjct 640395 TTTGTCTTGAATCTT 640409 Score = 86.0 bits (94), Expect = 4e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 356451 TTTTCCTTTTAATGGGAAAATACCATAATAATCTCTTCCGACAACATTTAATCCAGACAT 356510 |||||| ||| ||||| | ||||||| ||||||||||| | | || || || | Sbjct 983109 TTTTCCACGTAAAGGGAAGACTCCATAATTGTCTCTTCCGACTTCGGTCAAACCTGAGAC 983050 Query 356511 AGCAAATGCTTTAGCTGAATCTCCTTCAGTAAGAATTAAAGTACATTTATATCCTTCTTT 356570 ||| || ||||| || ||||||||||| || ||||| | |||||||| | |||||| Sbjct 983049 AGCCAAAGCTTTGGCGGAATCTCCTTCGGTGAGAATCAGAGTACATTCAGATCCTTTACG 982990 Query 356571 TGTTCCAGCTTTATGAGCAT 356590 |||||||| || | |||| Sbjct 982989 AGTTCCAGCATTGTTGGCAT 982970 >seq3 Length=1594217 Score = 105 bits (116), Expect = 4e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| || | ||||| ||||| || || || ||||||||||||||||| || || ||| Sbjct 738900 GATGCCGTCGTCACTGTCCCAGCCTACTTCAACGATTCTCAACGTCAAGCCACAAAGGAT 738841 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 || ||| ||||| ||||| || || | ||||| || || |||||||| || || || Sbjct 738840 GCTGGAGTCATTGCTGGTCTCAACGTCATGCGTATCATCAACGAACCAACTGCCGCTGCC 738781 Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876 | ||||| ||||| || ||||| Sbjct 738780 ATCGCTTACGGTCTAGACAAGAA 738758 Score = 91.5 bits (100), Expect = 1e-12 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || || ||| |||| || |||||| |||||| |||||||||||||||| | ||| ||| Sbjct 739636 GGAATCGATCTAGGTACCACTTACTCTTGTGTCGCTGTTTGGCAAAATGACAGAGTCGAA 739577 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATG 474437 | ||||| || ||||||||||| ||||| || || || |||| Sbjct 739576 GTCATTGCAAACGACCAAGGTAACAGAACCACTCCTTCTTATG 739534 >seq15 Length=848729 Score = 104 bits (114), Expect = 2e-16 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 474738 CAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGG 474797 |||| || ||||| ||||| || || || ||||| || |||||||| || || ||||| | Sbjct 516188 CAGTCATCACTGTCCCAGCCTACTTCAACGATTCCCAGCGTCAAGCCACCAAGGATGCAG 516129 Query 474798 GAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857 | | |||||||||||| | || ||||| | || || ||||||||||| ||||| || | Sbjct 516128 GTACAATTGCAGGTCTAGACGTCCTACGTGTCATCAACGAACCAACAGCCGCCGCTCTAG 516069 Query 474858 CTTATGG 474864 |||| || Sbjct 516068 CTTACGG 516062 Score = 98.7 bits (108), Expect = 6e-15 Identities = 130/178 (73%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 480593 ATTATAATCAGCT-AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTT 480651 ||| ||||| ||| |||||||| ||||| | || || |||||||| || | | || Sbjct 552164 ATTGTAATC-GCTCAGAGTTCTACCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTTT 552106 Query 480652 GTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTAT 480711 |||| || ||||| ||||||||||||||||| ||||| |||||| ||||| || | Sbjct 552105 GTTGGTCGGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGT 552046 Query 480712 CAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | | || ||||| || || |||||||| | ||||| ||||||||||| Sbjct 552045 CACCGGATTCGACCTCTAGGGTGATCGTCTTACCGGTCAAGGTCTTGACGAAAATTTG 551988 >seq6 Length=1288008 Score = 100 bits (110), Expect = 2e-15 Identities = 132/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 480588 GAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGA 480647 ||||| ||| | || | |||||||| || ||||| | |||||||| ||| | || ||| Sbjct 17772 GAAAC-TTACAGTCTTCCAGAGTTCTATTGTCTTCCAACTGCTTTCCTGCATAGATCAGA 17830 Query 480648 CGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATA 480707 |||||||| ||||| || || ||||| | | ||||||||| |||| | || ||| Sbjct 17831 CGTTGTTGGTCAGGTGGGATACCTTCAATCTTTTGAATCTTGAGTTTTGTATCTGGTATA 17890 Query 480708 GTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATT 480767 | ||| | | | | ||| | ||||| ||||| || ||||||||||| ||||| || Sbjct 17891 GAATCCATTGGATAGGATTCGATTGTAATGGTTTTGCCCGTGAGAGTCTTGACGAAGATC 17950 Query 480768 TG 480769 || Sbjct 17951 TG 17952 Score = 93.3 bits (102), Expect = 3e-13 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 || ||||| |||||| | ||||||||| ||||||| ||||||||||| || |||||| Sbjct 105916 AGGGTTCTTCCATCTTCCAATTGCTTTCCTGCAAAAACAAGACGTTGTTTCTCTGGAGGA 105975 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGA 480696 || ||||| |||||||||||||| ||||| Sbjct 105976 ATGCCTTCTTTGTCTTGAATCTTGCATTTGA 106006 Score = 86.0 bits (94), Expect = 4e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||| |||||| |||| ||||||||||||||||| ||||||| |||||| | Sbjct 299222 ATCTTCCAATTGTTTTCCACCAAAGATAAGACGTTGTTGATCTGGAGGAACTCCTTCTCT 299281 Query 480677 GTCTTGAATC 480686 |||||||||| Sbjct 299282 GTCTTGAATC 299291 >seq12 Length=1121745 Score = 91.5 bits (100), Expect = 1e-12 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 330988 GGATTCCATAAATTAATAATAATTCTTCTATCTGTCGGATTATT-TTTAATTGCTTCGAT 331046 |||||||| | | ||||| ||||||||||| || || || | |||| || | | | Sbjct 391498 GGATTCCAAGCACTCATAATGATTCTTCTATCAGTAGGGTTTTCCTTTATTTTCCTA-AC 391556 Query 331047 ACAtttttttAATTGATCAATTCCTTGCCCGCTGTAATCTTTTTTACAATTTTCATATGT 331106 ||||| |||||||| | ||||| || || ||||| | | ||||| |||||| | Sbjct 391557 ACATTCCGCCAATTGATCCACTCCTTTGCCACTATAATCCGTATCACAATCCTCATATTT 391616 Query 331107 TGCACCAAAATATCTCATTTGGAAACCATATCCAGGACCTATATCACCT 331155 ||||| |||| |||| |||||||||||| | ||||||| ||| ||| Sbjct 391617 AGCACCGAAATGTCTCCATTGGAAACCATAAACTGGACCTAAATCCCCT 391665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268176497624324