Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq28 248 1e-60 >seq28 Length=226377 Score = 248 bits (274), Expect = 1e-60 Identities = 616/928 (66%), Gaps = 13/928 (1%) Strand=Plus/Plus Query 75148 CTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCTTCAACGGCTCGATGGCATCCTCATGG 75206 ||| ||| |||| || ||||||| || || | |||| ||| || |||| | || | Sbjct 216826 CTTCGGTTTCAAGACTCTTGAGA-GATCTTACCTTCTACGAATCAATGGAAAGGTCGCCG 216884 Query 75207 AAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATT 75266 || || || ||||| ||||||| ||||| || || ||||| || ||| | || Sbjct 216885 AACGTCCTCAACACATGCTCATGCGTGTCGCCATTGGAATCCATGGAACCGACGTCGAAA 216944 Query 75267 CTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCC 75326 | | | ||||| || || |||||| | | |||| ||||| | ||||| | Sbjct 216945 AGGCCATCGAGACTTATAACCTCATGTCCGAGAAGACTTTCACCCACGCTTCTCCAACTC 217004 Query 75327 TCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGG 75386 ||||||| ||||| || || | || ||||| || ||| | || ||| |||| Sbjct 217005 TCTTCAACGCTGGAACTCCTCATTCTCAAATGTCTTCCTGTTTCTTGGTCACCATGAAGG 217064 Query 75387 AGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGG 75446 | ||||| ||| | || ||||| | ||||| | | |||||| ||||| ||| | Sbjct 217065 ACGACTCCATCGAAGGAATCTACGACACTCTCAAGACGTGTGCCATGATCTCCAAGACTG 217124 Query 75447 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGA 75506 | || || || || | || |||| | | | | | | |||| ||| || | Sbjct 217125 CAGGTGGAATCGGTCTCAACGTCCACAACATTCGTGGAACTGGATCTTACATTGCTGGAA 217184 Query 75507 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566 | ||||| || | ||||| |||| ||||| || || | ||| ||| || | | Sbjct 217185 CCAATGGATTCTCCAACGGTATCGTTCCCATGCTACGTGTCTACAACAACACTGCTAGAT 217244 Query 75567 ATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 | || |||||| || ||||| ||| | || | || |||||||||| |||| Sbjct 217245 ACGTCGATCAAGGAGGAAACAAGCGTCC--AGGTG-CCTTTGCCATCTACTTGGAGCCAT 217301 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTC 75680 ||||| | || || | || ||| | || |||| ||||| || | || || | || Sbjct 217302 GGCATTCAGACGTCTTCGAATTCTTGGATCTACGTAAGAACCACGGAAAGGAGGAAGTTC 217361 Query 75681 GGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 | ||||| || || | | || |||||||||||||| ||||||||| | || ||| Sbjct 217362 GTGCCAGAGAACTGTTCTACGCTCTTTGGATTCCAGACCTCTTCATGAAGAGAGTAGAGA 217421 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAG-ACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 || | | |||||||| | ||||| | | || || ||||||||| | |||| Sbjct 217422 AGAACGAGGATTGGTCTCTACTTTGTCCTGGAGAATGC-CCAGGTCTCGCTGACGTCTAC 217480 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACT 75859 || ||||| || ||||| || ||||| ||||| ||| || ||||||||||| || Sbjct 217481 GGAGAGGAATTCGAAGCTCTTTACACCAAGTACGAATCCGAAGGTAGAGCCAAGAGAACC 217540 Query 75860 GTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCA 75919 || ||| | ||||| | || || | || | || || || ||||||| || Sbjct 217541 GTCAAAGCTCAAAAGCTTTGGTATGCCATCTTGGAAGCTCAAACCGAAACTGGAAATCCT 217600 Query 75920 TATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATC 75979 || |||||||||||||| ||| |||| ||||||||||| ||||| | ||||| ||| Sbjct 217601 TACATGCTTTACAAGGACGCTGCAAACAGAAAGAGTAACCAGAAGAACCTAGGAACCATC 217660 Query 75980 AAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTT 76039 ||| ||||||| ||||| || ||||| | || |||| | | |||||| || || Sbjct 217661 AAGTGCTCAAACCTTTGTACTGAAATCATCGAATACAGTGCTCCGGATGAAGTAGCCGTC 217720 Query 76040 TGCAATTTGGCATCAATCGCCCTTCCAA 76067 ||||| ||||| || ||||| ||||||| Sbjct 217721 TGCAACTTGGCTTCCATCGCTCTTCCAA 217748 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 76487 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 76546 ||||| |||||| |||| | | || ||||||||||| ||||| || | ||||||||| Sbjct 218168 GGTCTACGTAACTCTCTTCTTCTAGCTCCAATGCCAACTGCCTCTACTTCTCAAATCTTG 218227 Query 76547 GGTAATAATGAATGCTTTGAACCATACACAACAAACATCTAC 76588 ||| || |||||||| ||||| ||||| ||||||||||| Sbjct 218228 GGTTTCAACGAATGCTTCGAACCTTACACTTCAAACATCTAC 218269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569130201440