Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq23 145 1e-29 seq4 104 3e-17 >seq23 Length=563827 Score = 145 bits (160), Expect = 1e-29 Identities = 161/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 18150 ATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAA 18209 |||||||||| || ||||| || ||||||||||||||||| || || ||||||||| || Sbjct 139416 ATAATAAACAAGCGAAATCGGTATGTAAACCTTCATCTCTTGAAATCAATTCGTTAGAAA 139475 Query 18210 ACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAG 18269 | || || || ||||||| |||||| || || | ||| || || || || ||| | || Sbjct 139476 AAGTCAAACCTGGCATTAAACCTCTCTTCTTGATCCAGAAGATTGAAGCAAAAGATCCAG 139535 Query 18270 AAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTAT 18329 | || || ||||| || ||| ||||| |||| ||||||||||||||| | ||| Sbjct 139536 AGAAAAAGATACCTTCGACGGCAGCGAAAGCTACTAATCTTTCAGCAAAGGTTGCTTTGG 139595 Query 18330 TGCTCAGT-ATCCATTTTTGTGCCCATTCTCC 18360 || ||| | |||||| || ||||||||||| Sbjct 139596 TG-TCATTGATCCATCTTAAAGCCCATTCTCC 139626 >seq4 Length=1327562 Score = 104 bits (114), Expect = 3e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| ||||| || || || | ||||||||| | Sbjct 1258184 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGA 1258125 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| ||| ||||| || || || ||||| || || || || ||| Sbjct 1258124 GATACCATCGACAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCCGATCAA 1258065 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || || ||||| | ||||| ||||| || ||||| || | Sbjct 1258064 CAAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCAGACTACA-- 1258007 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTA 156035 | ||||||| || |||| ||||| || || ||| Sbjct 1258006 ACATCCAAAAGGAATCGACTCTTCACTTGGTCTTA 1257972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871423650800