Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq23 136 8e-27 seq1 122 2e-22 seq4 109 1e-18 seq15 86.0 1e-11 >seq23 Length=563827 Score = 136 bits (150), Expect = 8e-27 Identities = 306/451 (68%), Gaps = 13/451 (3%) Strand=Plus/Plus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAATAA 49651 ||| ||||| || ||||| | | ||||||| ||| || || ||| | | | | || Sbjct 139195 CATGAAATCGAAAGGATTCGTAGAGTTATAATGTTTGTCAT-TACCAAGAGAGACCAAAA 139253 Query 49652 -TCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATT 49710 |||||| || || ||||||| |||||| ||||||||| | ||||| || | | Sbjct 139254 GTCTATCAGCAACGAATTCAATATATTGACACATTAATTTAGCGTTCATTCCAATGAGAG 139313 Query 49711 TAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaattat- 49768 | ||||| || || |||| ||| || || | ||| | ||||||| |||| || Sbjct 139314 CGCAAGGTAAAGCGTCTCTCAAGAAAGCCTGTT-CAATTCCAACAGCTTCAGTAATGATA 139372 Query 49769 --cataattatattattttttgataatttatatttaatatgattcgcatatattaaACAT 49826 || || ||| | ||| | | ||||| |||| | ||| |||||| Sbjct 139373 GCCAAAACCGTATC--TGGATGAGCTCTCTTCTTTAA-ATGA---GAGAATAATAAACAA 139426 Query 49827 GCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 49886 || ||||| ||||||||||| || || || || || ||||| ||| |||||| || ||| Sbjct 139427 GCGAAATCGGTATGTAAACCTTCATCTCTTGAAATCAATTCGTTAGAAAAAGTCAAACCT 139486 Query 49887 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 49946 |||||||| |||||||| || | ||| || ||||| |||||| | ||| || || ||| Sbjct 139487 GGCATTAAACCTCTCTTCTTGATCCAGAAGATTGAAGCAAAAGATCCAGAGAAAAAGATA 139546 Query 49947 CCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATC 50006 || ||||| || || |||| || |||| | |||| || ||| || ||| Sbjct 139547 CCTTCGACGGCAGCGAAAGCTACTAATCTTTCAGCAAAGGTTGCTTTGGTGTCATTGATC 139606 Query 50007 CAATTTATAGCCCAATCTGCtttttttttGA 50037 || ||| |||||| ||| | |||| ||||| Sbjct 139607 CATCTTAAAGCCCATTCTCCCTTTTGTTTGA 139637 >seq1 Length=2409711 Score = 122 bits (134), Expect = 2e-22 Identities = 154/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 192327 TACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCAT 192385 ||| ||||| | ||||| || ||| || || || ||||| || | |||| | |||| | Sbjct 336344 TACCAAATGAAGAGTAGATTCCTTTTGA-ATGTTGTAATCCGAAAGGGTTCTTCCATCTT 336402 Query 192386 CCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTT 192445 ||||||| || ||||||||||||||||| |||||||| ||||| |||||||| || |||| Sbjct 336403 CCAATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTCTT 336462 Query 192446 GTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTT 192505 | ||||| || ||||| |||| || || || || || || || || || | Sbjct 336463 GGATTTTGGCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTGATAGTCT 336522 Query 192506 TACCAGTTAATGTTTTAATAAATATCTGC 192534 |||| ||||| || |||| || || ||| Sbjct 336523 TACCCGTTAAGGTCTTAACGAAAATTTGC 336551 Score = 96.9 bits (106), Expect = 7e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||||| ||| || || | || | ||||| ||| || |||||| Sbjct 640739 ATTCCACCACGTAGACGTAGTACCAAGTGCAGGGTTGATTCTTTCTGGATGTTGTAATCA 640798 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || | |||| |||||||| || ||||||||||||| | |||||||| ||| Sbjct 640799 GACAGAGTCCTACCATCCTCCAATTGCTTTCCAGCAAAGATTAGACGTTGTTGATCCGGT 640858 Query 192427 GGTATTCCTTCTTTATCTTGTATTTT 192452 || |||||||| || ||||| ||||| Sbjct 640859 GGGATTCCTTCCTTGTCTTGGATTTT 640884 Score = 91.5 bits (100), Expect = 3e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAGA 192368 |||||||||||||||| || ||||| | ||| | | |||| || || || || || || Sbjct 640267 CCACCTCTAAGACGTAGGACCAAATGGAGAGTGGATTCCTTTTGA-ATGTTGTAGTCTGA 640325 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| |||| | || || | ||| || || |||||||| | || |||||||| ||||| Sbjct 640326 TAAGGTTCTACCGTCTTCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGATCGGGTGG 640385 Query 192429 TATTCCTTCTTTATCTTGTATTTT 192452 || |||||||| ||||| || || Sbjct 640386 AATACCTTCTTTGTCTTGAATCTT 640409 >seq4 Length=1327562 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || || || | |||| | | || |||||||| ||||| || ||||| ||||| Sbjct 1258532 GATGTTGTAGTCTGAGAGGGTTCTTCCGTCTTCCAATTGCTTACCGGCGAAGATCAATCT 1258591 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||| |||||||| || |||||||| ||||| |||||| || ||||| || | Sbjct 1258592 CTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTGTCAATGGT 1258651 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || ||||| |||||||| || || || || || | || || | || ||||| Sbjct 1258652 GTCTCCAGACTCTACCTCTAGAGTGATAGTCTTTCCGGTAAGAGTCTTTACGAAGATCTG 1258711 Query 192534 CAT 192536 ||| Sbjct 1258712 CAT 1258714 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||||| | || ||||| | || | || ||| || || || ||||| Sbjct 1257730 CCACCACGTAGACGAAGAACCAAATGAAGGGTGGATTCCTTTTGA-ATGTTGTAATCGCT 1257788 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| | || ||||||||||| ||||||||||| | | |||||||||||||| Sbjct 1257789 CAAAGTTCTACCGTCTTCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGG 1257848 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| || || ||||| || || || || ||| |||| ||| ||||| || Sbjct 1257849 AATTCCCTCCTTGTCTTGAATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCGAC 1257908 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| | |||||| || || || || || || || | || || ||||| Sbjct 1257909 TTCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || || || | |||| |||| |||| ||| || ||||||||||| | | Sbjct 1259033 GATGTTGTAGTCTGAAAGAGTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAGACG 1259092 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||| ||||| || || ||||| |||||||| || || ||||| || || | Sbjct 1259093 TTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTGCCTTTACGTTGTCGATGGT 1259152 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || ||||| ||||| ||||| ||||| || |||||||| ||||| | || || || Sbjct 1259153 GTCACCAGATTCCACTTCGAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAGATTTG 1259212 Query 192534 CAT 192536 ||| Sbjct 1259213 CAT 1259215 >seq15 Length=848729 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||| | |||| | || ||||| ||||||||||||||||| ||||| Sbjct 552167 GATATTGTAATCGCTCAGAGTTCTACCGTCTTCCAACTGTTTACCAGCAAAGATCAATCT 552108 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||| || || || |||||||| || ||||| || || || ||||| || | Sbjct 552107 TTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGT 552048 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || ||||| || ||||| || || || ||||| || || || || | || || || Sbjct 552047 GTCACCGGATTCGACCTCTAGGGTGATCGTCTTACCGGTCAAGGTCTTGACGAAAATTTG 551988 Query 192534 CATTT 192538 | ||| Sbjct 551987 CCTTT 551983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479205340050