Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq23 132 9e-26 seq4 122 2e-22 seq15 98.7 2e-15 >seq23 Length=563827 Score = 132 bits (146), Expect = 9e-26 Identities = 321/477 (67%), Gaps = 13/477 (3%) Strand=Plus/Plus Query 38868 GTTTTTCCTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATAT 38927 ||||| || | ||| || || | ||| ||||| || ||||| | | ||||||| | Sbjct 139169 GTTTTACCCTGTAAAGAAATGTTCTCCATGAAATCGAAAGGATTCGTAGAGTTATAATGT 139228 Query 38928 TTTTCTCCTATCAATACATATAATAA-TCTATCGGCCACAAATTCAACATATTGTAACAT 38986 || || || ||| | | | | || |||||| || || ||||||| |||||| |||| Sbjct 139229 TTGTCAT-TACCAAGAGAGACCAAAAGTCTATCAGCAACGAATTCAATATATTGACACAT 139287 Query 38987 TAATTCACAATTCATACCCAATAATTTAAATGGTAATGCATCA-TCAATAAATTCttttt 39045 ||||| | ||||| || | | | ||||| || || |||| ||| || || Sbjct 139288 TAATTTAGCGTTCATTCCAATGAGAGCGCAAGGTAAAGCGTCTCTCAAGAAAGCCTGTT- 139346 Query 39046 ctatttctacagcttgtttaattat---cataattatattattttttgataatttatatt 39102 | ||| | ||||||| |||| || || || ||| | ||| | | || Sbjct 139347 CAATTCCAACAGCTTCAGTAATGATAGCCAAAACCGTATC--TGGATGAGCTCTCTTCTT 139404 Query 39103 taatatgattcgcatataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATA 39162 ||| |||| | ||| |||||| || ||||| |||||||||||||| || || || | Sbjct 139405 TAA-ATGA---GAGAATAATAAACAAGCGAAATCGGTATGTAAACCTTCATCTCTTGAAA 139460 Query 39163 TAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTG 39222 | ||||| ||| |||||| || ||||||||||| |||||||| || | ||| || |||| Sbjct 139461 TCAATTCGTTAGAAAAAGTCAAACCTGGCATTAAACCTCTCTTCTTGATCCAGAAGATTG 139520 Query 39223 ATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTC 39282 | |||||| | ||| || || ||||| || || || || |||| || |||| | Sbjct 139521 AAGCAAAAGATCCAGAGAAAAAGATACCTTCGACGGCAGCGAAAGCTACTAATCTTTCAG 139580 Query 39283 CAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGA 39339 |||| || ||| || ||||| ||| ||||| ||| | |||| ||||| Sbjct 139581 CAAAGGTTGCTTTGGTGTCATTGATCCATCTTAAAGCCCATTCTCCCTTTTGTTTGA 139637 >seq4 Length=1327562 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || ||||| | | || | |||| |||||||| ||||| || || || |||||| Sbjct 1258533 ATGTTGTAGTCTGAGAGGGTTCTTCCGTCTTCCAATTGCTTACCGGCGAAGATCAATCTC 1258592 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||||||||| || |||||||| ||||| |||||| || ||||| || || Sbjct 1258593 TGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTGTCAATGGTG 1258652 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||| || ||||| |||||||| || || || || || | || || | ||| |||||| Sbjct 1258653 TCTCCAGACTCTACCTCTAGAGTGATAGTCTTTCCGGTAAGAGTCTTTACGAAGATCTGC 1258712 Query 172068 AT 172069 || Sbjct 1258713 AT 1258714 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || ||||| | || || | || |||| ||| || |||||||| || | | Sbjct 1259034 ATGTTGTAGTCTGAAAGAGTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAGACGT 1259093 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||||||||| || || ||||| |||||||| || || ||||| || || || Sbjct 1259094 TGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTGCCTTTACGTTGTCGATGGTG 1259153 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || ||||| ||||| ||||| ||||| || |||||||| ||||| | ||| || ||| Sbjct 1259154 TCACCAGATTCCACTTCGAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAGATTTGC 1259213 Query 172068 AT 172069 || Sbjct 1259214 AT 1259215 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| |||| || |||| ||||||||||| |||||||| || | | Sbjct 1257774 AATGTTGTAATCGCTCAAAGTTCTACCGTCTTCCAATTGTTTTCCAGCAAAGATAAGACG 1257833 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| |||||||| ||||| || || ||||| || || || || ||| ||||| Sbjct 1257834 TTGTTGATCAGGTGGAATTCCCTCCTTGTCTTGAATCTTTGCCTTAACGTTATCAATAGT 1257893 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| ||||| ||||| | |||||| || || || || || || || | ||| || || Sbjct 1257894 ATCACTAGATTCGACTTCCAAAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATTTG 1257953 Query 172067 CAT 172069 ||| Sbjct 1257954 CAT 1257956 >seq15 Length=848729 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| ||||| |||||||||||||| || ||||| |||||||| || || |||||||| | Sbjct 552141 CGTCTTCCAACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCT 552082 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || || ||||| || || || ||||| || ||||| || | Sbjct 552081 TGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCACCGGATTCGACCTCTAGGGTGA 552022 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT 172071 | || ||||| || || || || | ||| || ||| ||| Sbjct 552021 TCGTCTTACCGGTCAAGGTCTTGACGAAAATTTGCCTTT 551983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135287205400