Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq28 138 3e-27 seq14 136 1e-26 >seq28 Length=226377 Score = 138 bits (152), Expect = 3e-27 Identities = 554/872 (64%), Gaps = 3/872 (0%) Strand=Plus/Minus Query 155628 CTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGG 155687 |||||||| | || ||| || ||||| || | ||||||||| |||| ||||||||| Sbjct 217698 CTGTATTCGATGATTTCAGTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCTGG 217639 Query 155688 TTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGT 155747 ||| || ||||| ||| |||||||| || ||||| || |||| || || | || Sbjct 217638 TTACTCTTTCTGTTTGCAGCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTTGA 217579 Query 155748 GCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCC 155807 || |||| || ||| || | | || || | | ||| ||| ||||| Sbjct 217578 GCTTCCAAGATGGCATACCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACCTTCG 217519 Query 155808 GACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 || || || || | || || | | | | ||||| ||||| ||| || || ||| Sbjct 217518 GATTCGTACTTGGTGTAAAGAGCTTCGAATTCCTCTCCGTAGACGTCAGCGAGACCTGGG 217459 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACA 155927 || | | || |||| || |||||| | || ||| | || ||| || | Sbjct 217458 CATTCTCCAGGACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAAGAGG 217399 Query 155928 TCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTC 155987 || ||||| ||| ||||| || || || || ||||| | ||||| ||| Sbjct 217398 TCTGGAATCCAAAGAGCGTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTGGTTC 217339 Query 155988 TTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA 156047 || ||||| || |||||||| | || | ||| |||||||| || || ||||| Sbjct 217338 TTACGTAGATCCAAGAATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGCAAAG 217279 Query 156048 CTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCT 156104 ||| | |||| || || ||||| || || | |||||| || ||| |||||| | Sbjct 217278 GCACCTGGACGCTTGTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGACACGT 217219 Query 156105 AGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAG 156164 ||||| |||| ||||| ||||| ||||||||||| ||| | || |||| | Sbjct 217218 AGCATGGGAACGATACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGTTCCA 217159 Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224 |||| || || | | || || || ||||||| || || || || || | Sbjct 217158 CGAATGTTGTGGACGTTGAGACCGATTCCACCTGCAGTCTTGGAGATCATGGCACACGTC 217099 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAA 156284 || | ||| | | | || ||||| || || || || | ||| | | | | || ||| Sbjct 217098 TTGAGAGTGTCGTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAAACAGGAA 217039 Query 156285 CTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATAC 156344 | ||||| | || |||||||||||||| || || || | || || | ||| | Sbjct 217038 GACATTTGAGAATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGTGAAAGTC 216979 Query 156345 TTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAG 156404 || | ||||| | || ||||| | ||| || | | | || || || | Sbjct 216978 TTCTCGGACATGAGGTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATGGATTCCA 216919 Query 156405 ATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGA 156464 || | ||| | ||| ||| || |||||||| || | | | ||||| ||||| ||| Sbjct 216918 ATGGCGACACGCATGAGCATGTGTTGAGGACGTTCGGCGACCTTTCCATTGATTCGTAGA 216859 Query 156465 AGGTATGCGCGTTCCAGAGTTTTAAACCCGAA 156496 ||||| | | || ||||| || || ||||| Sbjct 216858 AGGTAAGATCTCTCAAGAGTCTTGAAACCGAA 216827 >seq14 Length=903556 Score = 136 bits (150), Expect = 1e-26 Identities = 386/583 (66%), Gaps = 14/583 (2%) Strand=Plus/Minus Query 251410 AGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCC 251469 |||||||| ||| ||| | ||| | || ||||||||||| |||||| | | | || Sbjct 720311 AGACCACAGATATCACAGATATGCAATCTATAAGCATCAGAAGCGTCAAACATTCTCTCC 720252 Query 251470 TTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGA 251529 || ||| | || | ||| || || ||||||||||| | |||||||| || || | Sbjct 720251 TTCAAGAAACCAGCTATACCATGAGAGATCATACAATCTCTTTCCATTTCTCCAAATCTC 720192 Query 251530 AGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GATT--AACCATAGGA 251586 | |||||||| | || ||||| || |||| || | ||| | |||| |||| ||| Sbjct 720191 AATCCACCATCTCTAGATCTACCTTCTACAGGTTGTCTAGTCAAGATTTGAACC---GGA 720135 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || | | | ||| |||||||| |||||||| || | | ||| || | | Sbjct 720134 CCTCTAGCTCTAGAATGAATCTTATCATCCACCATATGTTTCAATCTCTGATAATAAGTT 720075 Query 251647 GGACCGATGAAGATGCTCGAAG--GCATTTGCTCTCCAGTTAGAGCGTTATACATAACTT 251704 ||||| | || | | || ||| || || ||||| || | |||||||| | | Sbjct 720074 GGACCCA--AATAAACCTGAGCTTGCAATTTCTTACCAGTATGACCATTATACATGATCT 720017 Query 251705 CGTTTCCATTAGATTCATAACCAAGTTTCTGTA-GCTCTGAAGCAATATCACCAATCTTG 251763 | ||| |||||| |||||| | |||| | | | ||| | || | | | | Sbjct 720016 CCAATCCTCTAGATTGATAACCTAAATTCTTCAAGATATGA-GAAACGGCTTCTACTGTC 719958 Query 251764 AATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAA 251823 |||| | |||| || | ||||| | |||| || | |||||| ||| Sbjct 719957 AATTCGGTAAATGGCGTAGCATCTCCTTCTTGACCTGAAAGAGTGGCTACTTTGGATAAC 719898 Query 251824 AGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATG 251883 | || | || | || ||||||||| ||||||||||| |||||||| ||| Sbjct 719897 AAACATTCGACTAAATGTCCAATCGTCATACGAGATGGAATAGCATGAGGATTGATAATG 719838 Query 251884 ATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCC 251942 ||||| ||| | | || || | |||||| |||||||| | || || ||| || |||| Sbjct 719837 ATGTCTGGTGTGATACCTTCGGAAGTGAATGGCATATCTTCTTG-TCTATAGGTGATTCC 719779 Query 251943 AATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCA 251985 |||||||||||||||||| ||||||||| |||||| || ||| Sbjct 719778 AATAGTTCCCTTTTGTCCATGACGAGAAGCGAACTTGTCTCCA 719736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816411967231