Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4 125 6e-24 seq1 122 8e-23 seq15 118 1e-21 >seq4 Length=1327562 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || || || || || |||||||| ||| | Sbjct 1258184 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGA 1258125 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| | ||| || || ||||| |||||||| || |||||||| Sbjct 1258124 GATACCATCGACAACGTCAAAGCCAAA-ATTCAGGACAAGGAAGGAATCCCACCCGATCA 1258066 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | ||||| || || || || || | || || |||| | ||||||| || || Sbjct 1258065 ACAAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCAGACTACAA 1258006 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| |||||||||||||| || |||||||| || || | || ||||| Sbjct 1258005 CATCCAAAAGGAATCGACTCTTCACTTGGTCTTACGTCTTCGTGGAGG 1257958 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || | ||||| || |||||||| | ||||| ||| | | Sbjct 1257956 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGT 1257897 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| |||| ||| |||||||| || ||||| || || ||||| Sbjct 1257896 GATACTATTGATAACGTTAAGGCAAA-GATTCAAGACAAGGAGGGAATTCCACCTGATCA 1257838 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| | |||||||| || ||||| |||| || |||| || ||||| || Sbjct 1257837 ACAACGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGCGATTACAA 1257778 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||||||| || || || ||||| Sbjct 1257777 CATTCAAAAGGAATCCACCCTTCATTTGGT 1257748 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || ||||| || || || ||||| | Sbjct 1258714 ATGCAGATCTTCGTAAAGACTCTTACCGGAAAGACTATCACTCTAGAGGTAGAGTCTGGA 1258655 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||||||||||||||| || || || || ||| Sbjct 1258654 GACACCATTGACAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCTGACCAA 1258595 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| ||||| || || |||| || |||| | | ||||| || ||| Sbjct 1258594 CAGAGATTGATCTTCGCCGGTAAGCAATTGGAAGACGGAAGAACCCTCTCAGACTACAAC 1258535 Query 24884 ATTCA 24888 || || Sbjct 1258534 ATCCA 1258530 >seq1 Length=2409711 Score = 122 bits (134), Expect = 8e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 24706 GCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGA 24765 ||| || || |||| || |||| ||||| ||||| || ||||| || || | || Sbjct 336551 GCAAATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGA 336492 Query 24766 CACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACA 24825 ||| | || | || || || ||||||||||| |||||||| || || |||||||| Sbjct 336491 CACTATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACA 336432 Query 24826 ACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACAT 24885 | | || |||||||| || || || |||| ||| |||| | | || ||||| ||||| Sbjct 336431 AAGATTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGGATTACAACAT 336372 Query 24886 TCAAAAGGAATCGACACTACACTTGGT 24912 |||||||||||| || || || ||||| Sbjct 336371 TCAAAAGGAATCTACTCTTCATTTGGT 336345 Score = 113 bits (124), Expect = 4e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| |||||||||||||| || || |||||||||||||| | ||||||||||| || Sbjct 640409 AAGATTCAAGACAAAGAAGGTATTCCACCCGATCAACAACGACTCATCTTTGCCGGAAAG 640350 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || || || |||| | | ||||| || ||||||||||||||||| || || || Sbjct 640349 CAACTAGAAGACGGTAGAACCTTATCAGACTACAACATTCAAAAGGAATCCACTCTCCAT 640290 Query 24908 TTGGT 24912 ||||| Sbjct 640289 TTGGT 640285 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || ||||||||||| |||||||| || || |||||||||||| | |||||||| || || Sbjct 640884 AAAATCCAAGACAAGGAAGGAATCCCACCGGATCAACAACGTCTAATCTTTGCTGGAAAG 640825 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || |||||||| || | |||| ||||| ||||| || || ||||| || || ||| Sbjct 640824 CAATTGGAGGATGGTAGGACTCTGTCTGATTACAACATCCAGAAAGAATCAACCCTGCAC 640765 Query 24908 TTGGT 24912 ||||| Sbjct 640764 TTGGT 640760 >seq15 Length=848729 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 |||||||| || || || || || || ||| || ||||| | || | || || Sbjct 552009 ACCGGTAAGACGATCACCCTAGAGGTCGAATCCGGTGACACCATTGACAATGTCAAGGCC 552068 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| |||||||| |||||||| |||||| | ||||||||||| || ||| Sbjct 552069 AAGATCCAAGACAAGGAAGGAATCCCTCCCGACCAACAAAGATTGATCTTTGCTGGTAAA 552128 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||| |||| || |||| || ||||| || || || |||||||| || || ||| Sbjct 552129 CAGTTGGAAGACGGTAGAACTCTGAGCGATTACAATATCCAGAAGGAATCCACTCTGCAC 552188 Query 24908 TTGGT 24912 ||||| Sbjct 552189 TTGGT 552193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897245705640