Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq4 127 3e-24 seq1 114 2e-20 >seq4 Length=1327562 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || |||||||| || || ||| | || || ||| | | Sbjct 1258183 TGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGAG 1258124 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| ||||| || || ||||| || ||||||||||||| Sbjct 1258123 ATACCATCGACAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCCGATCAAC 1258064 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| ||||| || |||||||| || |||||| || |||| || || | Sbjct 1258063 AAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCAGACTACAACA 1258004 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||||||| | || || || ||||| | | ||||||| Sbjct 1258003 TCCAAAAGGAATCGACTCTTCACTTGGTCTTACGTCTTCGTGGAGGTA 1257956 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| |||| || | || ||||| || || ||| | || ||||| | | Sbjct 1258713 TGCAGATCTTCGTAAAGACTCTTACCGGAAAGACTATCACTCTAGAGGTAGAGTCTGGAG 1258654 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || |||||| ||| ||||||||||||||||| || |||| Sbjct 1258653 ACACCATTGACAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCTGACCAAC 1258594 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGA 146185 | ||| | || || || ||||| ||||| || || Sbjct 1258593 AGAGATTGATCTTCGCCGGTAAGCAATTGGAAGA 1258560 >seq1 Length=2409711 Score = 114 bits (126), Expect = 2e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 |||||||| |||||||||||||||||| ||||||| ||||| || || ||| |||| || Sbjct 640397 AAAGAAGGTATTCCACCCGATCAACAACGACTCATCTTTGCCGGAAAGCAACTAGAAGAC 640338 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 |||||| ||| |||| || || || ||||| ||||| ||| ||||||| || |||| Sbjct 640337 GGTAGAACCTTATCAGACTACAACATTCAAAAGGAATCCACTCTCCATTTGGTCCTACGT 640278 Query 146247 TTAAGAGGAGG 146257 | ||||| || Sbjct 640277 CTTAGAGGTGG 640267 Score = 104 bits (114), Expect = 4e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 146033 GCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGA 146092 |||||| ||| | || || ||||| || || || || || | || || || | || Sbjct 336551 GCAAATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGA 336492 Query 146093 TACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACA 146152 ||||| | ||||| || ||||| ||| || ||||| |||||||| |||||||| Sbjct 336491 CACTATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACA 336432 Query 146153 AAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATAT 146212 |||| | || ||||| || || ||||| || ||| ||||| | | ||||| || || Sbjct 336431 AAGATTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGGATTACAACAT 336372 Query 146213 ACAAAAAGAATCGACTATCCATTTAGTATTACGATTA 146249 ||||| ||||| ||| | ||||| ||| | || ||| Sbjct 336371 TCAAAAGGAATCTACTCTTCATTTGGTACTTCGGTTA 336335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786165780893960