Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 141 7e-29 seq4 118 8e-22 seq15 82.4 6e-11 >seq1 Length=2409711 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 || || || ||||||||||| || ||||| ||||||||||| ||||||| || ||| | Sbjct 336336 AACCGAAGTACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTT 336395 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | ||| || |||||| | || |||||||| ||||| || ||||| || || Sbjct 336396 CCATCTTCCAATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCC 336455 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 |||||||| | ||| |||||| | || | ||||||| | || || || || || Sbjct 336456 TTGTCTTGGATTTTGGCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTG 336515 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 ||||| || || |||||||| ||||| || || ||| Sbjct 336516 ATAGTCTTACCCGTTAAGGTCTTAACGAAAATTTGC 336551 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || || | ||| || |||||||| || |||||||| ||||||||||| || || | Sbjct 640266 TCCACCTCTAAGACGTAGGACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGA 640325 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| | | || || ||||| || || ||| | || | || ||| ||||| || || Sbjct 640326 TAAGGTTCTACCGTCTTCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGATCGGGTGG 640385 Query 29679 AATACCCTCTTTGTCTTG 29696 |||||| ||||||||||| Sbjct 640386 AATACCTTCTTTGTCTTG 640403 >seq4 Length=1327562 Score = 118 bits (130), Expect = 8e-22 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || ||||||||||| |||||||| ||||||||||| ||||| | ||| || | | Sbjct 1257741 ACGAAGAACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAA-AGTTCTAC 1257799 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || || | |||||| |||||| | || | | ||| ||||| || ||||| ||||| | Sbjct 1257800 CGTCTTCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTCCT 1257859 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 ||||||| ||| |||| || || | || | ||| ||| | ||| ||||| | ||| Sbjct 1257860 TGTCTTG-AATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCGACTTCCAAAGTA 1257918 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || || || || || ||||| Sbjct 1257919 ATAGTCTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| | ||||| ||||| || ||||| ||||| ||||| || || | Sbjct 1257958 CCTCCACGAAGACGTAAGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCTGAC 1258017 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | | || || | ||| || || || | ||||||||||| ||||| || || Sbjct 1258018 AAGGTTCTACCGTCTTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGGGTGGG 1258077 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || |||||| | |||||| | || | || || | ||| || Sbjct 1258078 ATTCCTTCCTTGTCCTG-AATTTTGGCTTTGACGTTGTCGATGGTATCTCCAGATTCGAC 1258136 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| || || || || || ||||| || ||||| || ||||| Sbjct 1258137 TTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTGACAAAGATTTGCAT 1258184 >seq15 Length=848729 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| || || |||||||| || || || || ||||| | || | | Sbjct 552199 CGAAGGACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCG 552140 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||||| |||||| | ||||||||||| || || || || || || || ||| Sbjct 552139 TCTTCCAACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTG 552080 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || |||||| | || | |||||| ||| || || || || || Sbjct 552079 TCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCACCGGATTCGACCTCTAGGGTGATC 552020 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAA 29791 || || || || ||||| || || || || ||| ||| || Sbjct 552019 GTCTTACCGGTCAAGGTCTTGACGAAAATTTGCCTTTGAA 551980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218904223883