Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq12 105 8e-18 seq14 87.8 2e-12 >seq12 Length=1121745 Score = 105 bits (116), Expect = 8e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 168546 AAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTTAAAGTTTGGAACGATAAT 168605 |||||| ||||||||| |||| || | ||||| || | ||||| | | ||| Sbjct 391772 AAAGGTGAAACTGATTCCAAACTTTTGACTGATAGGAAAATTCATATTTGGGATGGAAAT 391713 Query 168606 GGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGAAAAGAAGGTGATTTAGGT 168665 ||||| ||||| || || | | ||||| | |||| |||||| ||||||||| Sbjct 391712 GGTTCGAAGGAATTCTTGGAATCTAGAGGTTTAGGTCATAGAAGAGAAGGGGATTTAGGT 391653 Query 168666 CCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTGTGATACAGAT 168725 ||| ||||||| || |||||||||||| || ||| ||||| || |||||||| ||| Sbjct 391652 CCAGTTTATGGTTTCCAATGGAGACATTTCGGTGCTAAATATGAGGATTGTGATACGGAT 391593 Query 168726 TACACCGGACAAGGAGTAGACCAATT 168751 || | || ||||||| || ||||| Sbjct 391592 TATAGTGGCAAAGGAGTGGATCAATT 391567 >seq14 Length=903556 Score = 87.8 bits (96), Expect = 2e-12 Identities = 182/265 (69%), Gaps = 12/265 (5%) Strand=Plus/Plus Query 193755 ATGTATTGTGGGTTTACTGGTAAAAGAATTGAAAA-TAAAATTTTTATAGGGCCAACTTA 193813 |||||| ||| ||||||||| | ||||| || | | ||| | | || |||||||| Sbjct 720022 ATGTATAATGGTCATACTGGTAAGA-AATTGCAAGCTCAGGTTTATTTGGGTCCAACTTA 720080 Query 193814 TTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGACAAGT 193873 |||||| | | ||||||||||| | ||||| || ||| ||||| | || | || Sbjct 720081 TTATCAGAGATTGAAACATATGGTGGATGATAAGATTCATTCTAGAGCTAGAGGTCCGGT 720140 Query 193874 GACTA-CTTTACATCGACAACCAAATTGT----GGTCGTTCTCAAGGTGGAGGTTTAAGA 193928 | ||| || | ||||||| ||| ||| | ||| || ||| || || ||| Sbjct 720141 TCAAATCTTGAC-TAGACAACC----TGTAGAAGGTAGATCTAGAGATGGTGGATTGAGA 720195 Query 193929 TTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTACTCAATTCTTGAATGAA 193988 |||||||||||||| | ||| ||||| | ||||||| || |||||||| || Sbjct 720196 TTTGGAGAAATGGAAAGAGATTGTATGATCTCTCATGGTATAGCTGGTTTCTTGAAGGAG 720255 Query 193989 AGAATGTTTTTGTATTCTGATCCTT 194013 ||||||||| ||||||| ||| Sbjct 720256 AGAATGTTTGACGCTTCTGATGCTT 720280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635177099797640