Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3 183 2e-40 seq28 86.0 5e-11 >seq3 Length=1594217 Score = 183 bits (202), Expect = 2e-40 Identities = 671/1042 (64%), Gaps = 28/1042 (3%) Strand=Plus/Plus Query 281447 TTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATC 281506 |||||||| | ||| || |||||||| ||||| ||||| || | |||||||||| || Sbjct 737873 TTGGCATCGACATCGAAGGTGACTTCGATTTGTGGGACACCACGAGGAGCAGGTGGAATA 737932 Query 281507 CCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCG 281566 || | | || |||| ||| || || || || || || || || ||| Sbjct 737933 CCAGAGAGTTCGAACTTTCCGAGAAGGTTGTTGTCCTTGGTACGAGCACGCTCTCCTTCG 737992 Query 281567 AAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTT 281625 || | ||| || |||| | | | ||| || || | ||||| | || ||| ||||| Sbjct 737993 AAGACTTGAATGAGTA-CACCTGGTTGGTTGTCGGCGTAAGTGGAGAAGACTTCTGATTT 738051 Query 281626 TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTC 281685 || || | || |||||||| | || | | || | | ||||||||| || || Sbjct 738052 CTTGGTTGGGACGGTAGTGTTTCTCTTGATTAGAGGAGTGAAGACACCACCAGCGGTCTC 738111 Query 281686 TAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGT 281745 | ||| | || ||||||| |||||| | ||| | || || |||| |||||| ||| Sbjct 738112 GATACCCATGGATAGAGGAGCGACATCGAGTAGAAGAAGATCTTGAGTCTTTTCAGAAGT 738171 Query 281746 TTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATT 281805 | ||| |||||| || ||||| | ||||| || || || || || || || || || Sbjct 738172 GTCACCTGAAAGAATGGCAGCTTGGACGGCAGCTCCGTAGGCGACGGCCTCGTCTGGGTT 738231 Query 281806 AACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGG 281865 | | | ||| ||| ||| ||||| |||| || || | | || | || Sbjct 738232 GATGGACTTGTTTGGTTCACGACCGTTGAAGAAATCCCTGAGGAGCTTTTGAACTCTTGG 738291 Query 281866 AATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT---TTATCCAGTTT 281922 ||||||| || ||||| || || || ||||| | || |||| || || | || Sbjct 738292 GATACGAGTGGAACCTCCGACCAAGACGATTTCGTTGAC---TGATCCCTTGTCGATCTT 738348 Query 281923 TGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAA----ACAAGTCTGAAC 281978 |||||| | || || || || ||||| | | | | | | | ||| || Sbjct 738349 TGAATCTCTGAGGACCTTCTCTACTGGTTCGAT----GGTGTGAGAGAAGAGGTCACCAC 738404 Query 281979 AAAGTTCTTCGAATTTAGCTCTAGTAAG---AGTGACATTATAA-TCAATTCCTTCGAAC 282034 | || || ||||| ||| | || || |||| || || || || |||||||| Sbjct 738405 AGAGCTCCTCGAAACGAGCACGGGTTAGGGAAGTG----TAGAAGTCGATACCTTCGAAG 738460 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094 | ||| || | ||| | | ||| || | | ||||| || | | |||||||| ||| Sbjct 738461 AGAGAGTCGATTTCCAAGGAAGTCTGGGCAGCTGAAGAGAGAGTTCTCTTAGCACGCTCA 738520 Query 282095 CATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATT 282152 || || || | ||| | || | || || ||| | | | || | || | | Sbjct 738521 CAGGCGGTACGTAGACGACGAAGAGCACGAGCG--TTGGTGGTGAGGTCCTTCTTGTTCT 738578 Query 282153 TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCA 282212 |||||||||| || | || | | || ||||| || || || || || ||||||| Sbjct 738579 TTCTCTTGAATTCCTGGACGAAGTGGTTGACTAGACGGTTGTCGAAGTCCTCTCCTCCCA 738638 Query 282213 ATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAG 282272 | | ||| | ||| | || || | |||| ||| | || || || | | | ||||| Sbjct 738639 AGTGAGTGTCTCCGGCGGTGGCCTTGACTTCGAAGATACCTTCCTCGATGGTTAGAAGAG 738698 Query 282273 TAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGT 282332 ||||| ||| || || |||| ||| || || || || ||| | || ||| | Sbjct 738699 AGACATCGAAGGTACCTCCTCCCAAATCGAAGATGAGGACGTTCTTCTCACCCTCTCCCT 738758 Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 | || || ||||| || || | ||||| ||||||||||| || || || | || || | Sbjct 738759 TCTTGTCTAGACCGTAAGCGATGGCAGCGGCAGTTGGTTCGTTGATGATACGCATGACGT 738818 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | ||||||||||| ||| ||||| || |||||||| | ||| |||||||| || || | Sbjct 738819 TGAGACCAGCAATGACTCCAGCATCCTTTGTGGCTTGACGTTGAGAATCGTTGAAGTAGG 738878 Query 282453 CAGGAACAGTAATAACGGCATC 282474 | || ||||| | |||||||| Sbjct 738879 CTGGGACAGTGACGACGGCATC 738900 >seq28 Length=226377 Score = 86.0 bits (94), Expect = 5e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 164571 ATTCCAGACAACATTAAAGCTATTTACAGGACTGTTTGGGAAATTCCTCAAAAATCCATC 164630 |||||||| | || || ||| | |||| ||||||||||||||||||||| || || ||| Sbjct 218408 ATTCCAGATAGAATCAAGGCTTTATACAAGACTGTTTGGGAAATTCCTCAGAAGTCTATC 218467 Query 164631 ATTGAAATGGCAGCTGATAGAG 164652 || || ||||| |||||||||| Sbjct 218468 ATCGATATGGCTGCTGATAGAG 218489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740627306966238