Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4 192 1e-43 seq15 178 3e-39 seq1 156 8e-33 seq6 109 1e-18 >seq4 Length=1327562 Score = 192 bits (212), Expect = 1e-43 Identities = 172/216 (80%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| || || || || ||||| || || || || ||||| | | ||||||| Sbjct 1257741 ACGAAGAACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAAAGTTCTACC 1257800 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| | |||||||||||||||||| || | ||||||||| || || ||||| ||||| Sbjct 1257801 GTCTTCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTCCTT 1257860 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||||||||| || || || ||||| |||||| ||| ||| ||||||||||| || Sbjct 1257861 GTCTTGAATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCGACTTCCAAAGTAAT 1257920 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| || || || ||||| Sbjct 1257921 AGTCTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| | || ||||| ||||| ||||| || || || || || || | Sbjct 1257956 TACCTCCACGAAGACGTAAGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCTG 1258015 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||||||||||||||| ||| ||||| || || || | |||||||||||| || | Sbjct 1258016 ACAAGGTTCTACCGTCTTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGGGTG 1258075 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || ||||| || ||||| || || || || ||||| || ||| | Sbjct 1258076 GGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTGTCGATGGTATCTCCAGATTCGA 1258135 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || ||||| |||||||| ||||| ||||| || ||||| Sbjct 1258136 CTTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTGACAAAGATTTGCAT 1258184 Score = 156 bits (172), Expect = 8e-33 Identities = 146/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 82625 CTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAG 82684 ||| || || || || || ||| ||||||| ||||| ||||| |||||||||||||| || Sbjct 1259030 CTGGATGTTGTAGTCTGAAAGAGTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAG 1259089 Query 82685 TCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAAT 82744 | |||||| || ||||| || ||||||||||||||||||||||| ||||| || || || Sbjct 1259090 ACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTGCCTTTACGTTGTCGAT 1259149 Query 82745 CGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATAT 82804 || ||| || ||| ||||| | ||| || ||||| || || || || || || || || Sbjct 1259150 GGTGTCACCAGATTCCACTTCGAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAGAT 1259209 Query 82805 CTGCAT 82810 ||||| Sbjct 1259210 TTGCAT 1259215 >seq15 Length=848729 Score = 178 bits (196), Expect = 3e-39 Identities = 169/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||||||||| ||||| ||||| ||||| ||||| ||| |||||||| Sbjct 552199 CGAAGGACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCG 552140 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | ||||| ||||||||||| | ||||||||| || ||||| ||||||||||| Sbjct 552139 TCTTCCAACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTG 552080 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| || || ||||| ||||| || ||| | ||| || || | || ||| Sbjct 552079 TCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCACCGGATTCGACCTCTAGGGTGATC 552020 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || ||||| ||||| || || || ||| || Sbjct 552019 GTCTTACCGGTCAAGGTCTTGACGAAAATTTGCCTT 551984 >seq1 Length=2409711 Score = 156 bits (172), Expect = 8e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 || || || || || || ||||||||||| || || || || ||||| || || |||| Sbjct 336336 AACCGAAGTACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTT 336395 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| | ||| |||||||||||||||| ||||||||||||||| || ||||||||| Sbjct 336396 CCATCTTCCAATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCC 336455 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || ||||| || || || || ||||| || || || ||| || || || || | || Sbjct 336456 TTGTCTTGGATTTTGGCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTG 336515 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || ||||| || || || ||||| || || || ||| Sbjct 336516 ATAGTCTTACCCGTTAAGGTCTTAACGAAAATTTGC 336551 Score = 138 bits (152), Expect = 2e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || |||||||| || ||||||||||| || || |||||||| ||| | ||||| Sbjct 640753 ACGTAGTACCAAGTGCAGGGTTGATTCTTTCTGGATGTTGTAATCAGACAGAGTCCTACC 640812 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | ||| ||||||||||||||||| | ||||||||| || || ||||||||||| Sbjct 640813 ATCCTCCAATTGCTTTCCAGCAAAGATTAGACGTTGTTGATCCGGTGGGATTCCTTCCTT 640872 Query 82715 ATCTTGAATCTTTGCTTTTAC 82735 ||||| || || ||||| || Sbjct 640873 GTCTTGGATTTTGGCTTTGAC 640893 Score = 131 bits (144), Expect = 3e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||| || || || || ||||| ||||| || || || || || || ||| Sbjct 640267 CCACCTCTAAGACGTAGGACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGAT 640326 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | ||||||||||||||||||| ||||| |||||||| |||| ||||||||| || || Sbjct 640327 AAGGTTCTACCGTCTTCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGATCGGGTGGA 640386 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTAC 82735 || ||||| || ||||||||||| || || || Sbjct 640387 ATACCTTCTTTGTCTTGAATCTTGGCCTTGAC 640418 >seq6 Length=1288008 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 |||||||||||| ||||| || || ||||| | | ||| ||||| ||||| |||||||| Sbjct 395285 ACCGTCTTCTAGCTGTTTACCTGCGAAGATAATACGTTGCTGATCGGGAGGAATTCCTTC 395344 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 ||||||||||||||| ||||| || || || ||||| ||| | |||||||| || Sbjct 395345 CTTATCTTGAATCTTGGCTTTGACGTTGTCGATCGTGTCACCTGAGAAAACTTCCAAGGT 395404 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 || ||| || ||||| ||| ||||| Sbjct 395405 GATGGTCGCTCCAGTCAAAACCTTAACAAA 395434 Score = 104 bits (114), Expect = 5e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 82648 TTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTC 82707 ||||||| ||||| | |||||||||| ||||||| || | ||||||||||||||| | || Sbjct 299215 TTCTACCATCTTCCAATTGTTTTCCACCAAAGATAAGACGTTGTTGATCTGGAGGAACTC 299274 Query 82708 CTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCA 82767 |||| | ||||||||| || || | |||| || |||| | | ||||| | Sbjct 299275 CTTCTCTGTCTTGAATCAGATACTTGACGTGGTCAACAGTGTCATCGGAAGCAACTTCTA 299334 Query 82768 AAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 |||| ||| |||| || ||||| ||||| ||| Sbjct 299335 AAGTAATCATCTTTCCAGTCAAGGTCTTGACA 299366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826407481357