Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq28 111 4e-19 seq24 111 4e-19 seq1 98.7 2e-15 >seq28 Length=226377 Score = 111 bits (122), Expect = 4e-19 Identities = 501/783 (64%), Gaps = 11/783 (1%) Strand=Plus/Plus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAA 110366 || |||||||| |||||||| | |||| | || || ||||||| || || ||| Sbjct 216827 TTCGGTTTCAAGACTCTTGAGAGATCTTACCTTCTACGAATCAATGGAAAGGTCGCCGAA 216886 Query 110367 CGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCT 110426 ||||||||||||||| | | ||||| || ||||| || |||||| || | || Sbjct 216887 CGTCCTCAACACATGCTCATGCGTGTCGCCATTGGAATCCATGGAACCGACGTCGAAAAG 216946 Query 110427 GTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTA 110486 | || || |||| | | | | |||| | || ||| |||| || || Sbjct 216947 GCCATCGAGACTTATAACCTCATGTCCGAGAAGACTTTCACCCACGCTTCTCCAACTCTC 217006 Query 110487 TTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATTAACGA 110545 || ||||| |||||| | ||| || |||| || |||||| | || || || Sbjct 217007 TTCAACGCTGGAACTCCTCATTCTCAAATGTCTTCCTG-TTTCTTGGTCACCATGAAGGA 217065 Query 110546 TGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTC 110605 || || || ||||| || || || |||| || ||| | || || || | | Sbjct 217066 CGACTCCATCGAAGGAATCTACGACACTCTCAAGACGTGTGCCATGATCTCCAAGACTGC 217125 Query 110606 TGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGC 110665 || ||||| ||| | |||| || | ||||| || ||| | | || || | | Sbjct 217126 AGGTGGAATCGGTCTCAACGTCCACAACATTCGTGGAACTGGATCTTACATTGCTGGAAC 217185 Query 110666 GAAGGG-TGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAAT 110724 || || | || |||| | | | ||||| ||| || | |||| |||| ||||||| | || Sbjct 217186 CAATGGATTCTCCAACGGTA-TCGTTCCCATGCTACGTGTCTACAACAACACTGCTAGAT 217244 Query 110725 ATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGC 110781 | || ||||||| || || | | || | ||||| ||||| | || || |||| Sbjct 217245 ACGTCGATCAAGGAGGAAACAAGCGTCCAGGTGCCTTTGCCATCTACTTGGAGCCATGGC 217304 Query 110782 ATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAG 110841 ||||||| | || |||||||| || || ||||| || || ||| || ||| | | Sbjct 217305 ATTCAGACGTCTTCGAATTCTTGGATCTACGTAAGAACCACGGAAAGGAGGAAGTTCGTG 217364 Query 110842 CACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAA 110901 | | || | || || || | |||||| |||| | |||||||| | || | | | Sbjct 217365 CCAGAGAACTGTTCTACGCTCTTTGGATTCCAGACCTCTTCATGAAGAGAGTAGAGAAGA 217424 Query 110902 ATG-GCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGA 110960 | | | || |||||||| | |||||| | || ||||| |||| || || ||| Sbjct 217425 ACGAGGAT-TGGTCTCTACTTTGTCCTGGAGAATGCCCAGGTCTCGCTGACGTCTACGGA 217483 Query 110961 AAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCA-AGTTTCGCAAACAAAT 111019 | || || |||| |||||| || || ||| ||||| | || | ||| | Sbjct 217484 GAGGAATTCGAAGCTCTTTACACCAAGTACGAATCCGAAGGTAGAGCCAAGAGAAC-CGT 217542 Query 111020 TCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTA 111079 ||||||| | ||||||| ||| | ||| | ||| |||||||||| |||||| Sbjct 217543 CAAAGCTCAAAAGCTTTGGTATGCCATCTTGGAAGCTCAAACCGAAACTGGAAATCCTTA 217602 Query 111080 TAT 111082 || Sbjct 217603 CAT 217605 >seq24 Length=570548 Score = 111 bits (122), Expect = 4e-19 Identities = 118/152 (78%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | ||||| ||||| || ||| | || || ||| |||||| |||||| || | Sbjct 512214 TTCAATCGTCAACCCTCACTTCACAAACTATCAATCATGTCTCATAGAGTCAAGGTCAGA 512273 Query 305396 TCT-GGATTGACATTTC-GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTG 305453 || ||| || |||| |||| || | | ||||||||| ||||| ||||| ||||| | Sbjct 512274 CCTTGGA--GAACTTTCAGATTGAACGAATGTGCTTGTAATCCTTACAATGCAGATTTCG 512331 Query 305454 ATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||||||||||||||| | || ||||||||| Sbjct 512332 ATGGAGATGAAATGAATCTCCACGTACCTCAA 512363 >seq1 Length=2409711 Score = 98.7 bits (108), Expect = 2e-15 Identities = 171/243 (70%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 279853 TCGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAG 279912 |||||| ||||| | | | |||||| | ||||| || |||||| | ||||| | Sbjct 983953 TCGTTCCATTCCAAACATGGTAGATGGTCTCAAACCCGGTCAACGTAAGGTCCTATTCGG 984012 Query 279913 TTGTTTCAAAAGAAAATTGGTAAAG--GAAATTCGTGTTGCTCAGTTAGCAGGTTATGTT 279970 || ||||| ||||| ||| |||| || || || ||||| || || ||||| || Sbjct 984013 ATGCTTCAAGAGAAAGTTG--AAAGCTGAGATCAAGGTAGCTCAATTGGCTGGTTACGTC 984070 Query 279971 TCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTCT---TCAAGGTGCTATTGTAGGT 280027 || || ||| | | ||| ||||| ||||||| ||||| |||| | || |||||| Sbjct 984071 TCTGAGCATTCCGCTTACCATCATGGTGAAGTCTCTCTGACTCAAA---CCATCGTAGGT 984127 Query 280028 CTTGCCCAAGATTT-TATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATT 280086 || || ||||| || | ||| | ||| |||| | || | || || |||||||||||||| Sbjct 984128 CTGGCTCAAGACTTCTGTGGATCCAA-CAACGTCAACATTCTATCTCCAAATGGTCAATT 984186 Query 280087 TGG 280089 || Sbjct 984187 CGG 984189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811842019543