Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq28 104 6e-17 seq4 104 6e-17 seq1 89.7 1e-12 seq15 86.0 1e-11 >seq28 Length=226377 Score = 104 bits (114), Expect = 6e-17 Identities = 192/279 (69%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 173079 GTGCTTTTGGTTATTTTTGCGGCATATGGCGTCCTTGTAGACGATGAAGGGCATACCAAC 173138 || ||| |||||| | || | | | ||||||||||| | ||| | || | ||| Sbjct 217648 GTTCTTCTGGTTACTCTTTCTGTTTGCAGCGTCCTTGTAAAGCATGTAAGGATTTCCAGT 217589 Query 173139 CTCCGCTTGAGCCACCAAAATGTGGTGCCAAAGTTCTTGGGCTTTTACGGTAGTTCTCGC 173198 || | |||||| |||| ||| | |||||| | ||| ||||| ||||| | | || Sbjct 217588 TTCGGTTTGAGCTTCCAAGATGGCATACCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGC 217529 Query 173199 TCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTCGTC 173258 ||| ||||| |||||| | || || ||||||| |||| ||||| | || | Sbjct 217528 TCTACCTTCGGATTCGTACTTGGTGTAAAGAGCTTCGAATTCCTCTCCGTAGACGTCAGC 217469 Query 173259 AAGACCGGGAGCTTCCTTC-GGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCTCT 173317 ||||| || || | || | ||||||| ||| ||||| | | |||| || |||| Sbjct 217468 GAGACCTGG-GCATTCTCCAGGACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCT 217410 Query 173318 TCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAACAATT 173356 ||||||||||||| | | |||||| |||||||||| || Sbjct 217409 TCATGAAGAGGTCTGGAATCCAAAGAGCGTAGAACAGTT 217371 >seq4 Length=1327562 Score = 104 bits (114), Expect = 6e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || ||||| || |||||| | ||||||||| | |||||| |||| Sbjct 1259201 CAAAACTTTAACTGGAAAGACCATCACTCTCGAAGTGGAATCTGGTGACACCATCGACAA 1259142 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| |||||||||||| || ||||| || || ||| ||| | || ||||| Sbjct 1259141 CGTAAAGGCAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAACAACGTCTCATCTT 1259082 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 206355 || |||||||| |||||||||| || ||| | | || |||||| ||||| Sbjct 1259081 TGCTGGAAAGCAACTGGAAGATGGTAGAACTCTTTCAGACTACAACATCCAG 1259030 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || || ||||||||||| ||| | ||| || | || || ||| | Sbjct 1257932 ACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGTGATACTATTGATAACGTTAAGGCA 1257873 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || || |||||| || || ||| | |||||||| || ||||| Sbjct 1257872 AAGATTCAAGACAAGGAGGGAATTCCACCTGATCAACAACGTCTTATCTTTGCTGGAAAA 1257813 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || |||||||| || || |||||| |||||||||| | || || || || || ||||| Sbjct 1257812 CAATTGGAAGACGGTAGAACTTTGAGCGATTACAACATTCAAAAGGAATCCACCCTTCA 1257754 >seq1 Length=2409711 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || || ||||| || ||||||||| || || |||||| | ||||| || |||||| Sbjct 336469 AAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAG 336410 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || |||||||||||||| || | | ||||||||| | || || || ||||||||||| Sbjct 336409 CAATTGGAAGATGGAAGAACCCTTTCGGATTACAACATTCAAAAGGAATCTACTCTTCA 336351 >seq15 Length=848729 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || |||||||| || ||| |||||| | ||||| || || || Sbjct 552069 AAGATCCAAGACAAGGAAGGAATCCCTCCCGACCAACAAAGATTGATCTTTGCTGGTAAA 552128 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||| || || ||| || ||||||||| ||||||| || || ||||| ||| Sbjct 552129 CAGTTGGAAGACGGTAGAACTCTGAGCGATTACAATATCCAGAAGGAATCCACTCTGCAC 552188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181819846049023