Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq4 120 3e-22 seq28 96.9 3e-15 >seq4 Length=1327562 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || |||||||| | || || | ||||||||| | | Sbjct 1257956 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGT 1257897 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || || ||| ||| || || ||||| || || || ||||| Sbjct 1257896 GATACTATTGATAACGTTAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCTGATCAA 1257837 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || || | | || |||||| | ||||| | ||||| | | ||||||||||| Sbjct 1257836 CAACGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGCGATTACAAC 1257777 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| ||||||||| ||||||| || Sbjct 1257776 ATTCAAAAGGAATCCACCCTTCATTTGGT 1257748 Score = 107 bits (118), Expect = 2e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || || ||||| | ||||| ||||||||||| | Sbjct 1258184 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGA 1258125 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| |||||| || || || || || || |||||||| Sbjct 1258124 GATACCATCGACAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCCGATCAA 1258065 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 |||||| | |||| || || || ||| | ||||| | ||||| ||||| || |||| Sbjct 1258064 CAAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCA--GACTACA 1258007 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 | || ||||| ||||| || |||| || || ||| Sbjct 1258006 ACATCCAAAAGGAATCGACTCTTCACTTGGTCTTA 1257972 >seq28 Length=226377 Score = 96.9 bits (106), Expect = 3e-15 Identities = 195/284 (69%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 138128 CACGAAT-TTGAGTTACGTTGAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACAA 138186 ||||||| ||| | |||||||| ||||| || ||| | || || ||||||||||| Sbjct 217160 CACGAATGTTGTGG-ACGTTGAGACCGATTCCACCTGCAGTCTTGGAGATCATGGCACAC 217102 Query 138187 TCGTTGAGAGTTCTATAGATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACAC 138246 |||||||| ||||| || | ||| ||| |||| ||| ||| | |||| Sbjct 217101 GTCTTGAGAGTGTCGTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAAACAG 217042 Query 138247 GACGACATTTGAGGCATTTTCA-TGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAA 138305 || |||||||||| || | | ||||| ||| ||||| ||| ||||||||| || Sbjct 217041 GAAGACATTTGAGA-ATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGTGAA 216983 Query 138306 CATTTTCGAGCGCATCAATCTATATGACTCGATCGCACTCTCGATATCATCACCATGAAT 138365 | ||| | ||| | |||| | |||||| || | |||| || ||||| || Sbjct 216982 AGTCTTCTCGGACATGAGGTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATGGAT 216923 Query 138366 CTGAAGAGCGACACGCATCAGCATGTGTTGAGGTCTCTCGACGA 138409 || ||||||||||| |||||||||||||| | ||| ||| Sbjct 216922 TCCAATGGCGACACGCATGAGCATGTGTTGAGGACGTTCGGCGA 216879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094049488160