Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4 120 3e-22 seq15 105 7e-18 seq1 96.9 4e-15 >seq4 Length=1327562 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || || || || | ||| || || ||||||||||| ||||||||||| | | Sbjct 1257958 CCTCCACGAAGACGTAAGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCTGAC 1258017 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| | ||| || | || || ||||| |||||||| | || |||||||| || Sbjct 1258018 AA-GGTTCTACCGTCTTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGGGTGG 1258076 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || |||||||| |||||| ||| | || || ||||| || Sbjct 1258077 GATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTGTCGATGGTATCTCCAGATTCGAC 1258136 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || || || || || || || || |||||||| Sbjct 1258137 TTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTGACAAAGATTTGCAT 1258184 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTGAGAGTCGTCGAGCTG 134569 || || ||||||||||||||||||||||| |||| ||| | | | | ||| || | || Sbjct 1257754 TGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAAAGTTCT-ACCGTCTTCCAATTG 1257812 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || ||||| || | ||| || ||||| || || || || || || |||||||| || Sbjct 1257813 TTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTCCTTGTCTTGAATCTT 1257872 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | || || || | || || ||||| || || | |||||| || || ||||| Sbjct 1257873 TGCCTTAACGTTATCAATAGTATCACTAGATTCGACTTCCAAAGTAATAGTCTTTCCGGT 1257932 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || |||||||||||||| Sbjct 1257933 CAAAGTCTTGACGAAAATTTGCAT 1257956 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || || || || || ||||| || | ||| || || || || || || ||||| || Sbjct 1259061 TCTTCCAGTTGCTTTCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATACCTTCCTTA 1259120 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 |||||||| ||| || || ||| | ||||| |||||||| |||||||| ||| Sbjct 1259121 TCTTGAATCTTTGCCTTTACGTTGTCGATGGTGTCACCAGATTCCACTTCGAGAGTGATG 1259180 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||||||||| ||||| |||||||| Sbjct 1259181 GTCTTTCCAGTTAAAGTTTTGACGAAGATTTGCAT 1259215 >seq15 Length=848729 Score = 105 bits (116), Expect = 7e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||||||||| || || ||||| |||| | || | ||| || | ||| Sbjct 552188 GTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCTTCCAACTG 552129 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || ||||| ||||| | || || ||||| || || ||||| || ||||| || || Sbjct 552128 TTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGGATCTT 552069 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | ||||| ||||| || || || || || || |||||||| Sbjct 552068 GGCCTTGACATTGTCAATGGTGTCACCGGATTCGACCTCTAGGGTGATCGTCTTACCGGT 552009 Query 134690 TAAAGTTTTAACGAAAATTTGCATTT 134715 || || || |||||||||||| ||| Sbjct 552008 CAAGGTCTTGACGAAAATTTGCCTTT 551983 >seq1 Length=2409711 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || |||||||||||||||||||| || || ||| || || | || Sbjct 336351 TGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCATCTTCCAATTGC 336410 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || || | || ||||| || || || ||||| || ||||| ||||| Sbjct 336411 TTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTG 336470 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| ||| | ||||| || || || ||||| || || || ||||| ||| Sbjct 336471 GCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTGATAGTCTTACCCGTT 336530 Query 134691 AAAGTTTTAACGAAAATTTGC 134711 || || ||||||||||||||| Sbjct 336531 AAGGTCTTAACGAAAATTTGC 336551 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| ||||| || || | || | || || |||||||||||||||||||||||||| Sbjct 640266 TCCACCTCTAAGACGTAGGACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGA 640325 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | ||| | ||| || || || || || ||||| || | || || |||||||| || Sbjct 640326 TAAGGTTCTACCGTCTTCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGATCGGGTGG 640385 Query 134606 TATGCCTTCTTTTTCTTGAATTTT 134629 || |||||||| |||||||| || Sbjct 640386 AATACCTTCTTTGTCTTGAATCTT 640409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398001998760