Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq28 334 1e-86 seq23 111 2e-19 >seq28 Length=226377 Score = 334 bits (370), Expect = 1e-86 Identities = 1186/1831 (65%), Gaps = 53/1831 (3%) Strand=Plus/Minus Query 68391 GGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTA 68450 || ||| ||| | || | | |||||| | || || |||| ||| |||| ||||| Sbjct 218629 GGCTGCAGGTCTAGTTCTCAAATAGTAAGTTCCAGTCTTCAAACCCTTCTTCCAACCGTA 218570 Query 68451 GAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTG 68510 ||| ||||| || |||| || | ||| ||| || ||| || |||| ||||| Sbjct 218569 GAAGTGCATTGAAGTAAGTTGACCGAAAGTAGGAGCGGATAGATGGATGTTCAAAGATTG 218510 Query 68511 ACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAAT 68570 | |||| |||||||| |||||||| || ||||| | || ||| ||| |||||||| Sbjct 218509 AGATTGACAAATGAAAGCACCTCTATCAGCAGCCATATCGATGATAGACTTCTGAGGAAT 218450 Query 68571 TTCCCAAATAGTCTT--AAAAATCTGTTTGATATCATCTGGAAGGC-TCGTA--TTTTGA 68625 |||||||| |||||| | ||| | ||||| |||||||| | | ||| |||||| Sbjct 218449 TTCCCAAACAGTCTTGTATAAAGCC--TTGATTCTATCTGGAATTCCTGGTACGTTTTGA 218392 Query 68626 ATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCC 68685 || |||||||||| | || || | ||||| ||| |||| ||| || | || Sbjct 218391 ATCGATCCACCATGAGCGATGATCCTGTTCTTCATCGATTCATCCCATAAACCTTGTTCG 218332 Query 68686 GTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGA 68745 || |||| | | ||||| || | ||| ||||| |||| || ||||||||| Sbjct 218331 ACCAATTCTCTCAACAACCAAGGATTGACGACTTGGAATTCTCCAGCCAAGACTCTACGA 218272 Query 68746 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTT 68805 | ||| || || || || ||||| | |||| || |||| ||||||| ||| Sbjct 218271 GAGTAGATGTTTGAAGTGTAAGGTTCGAAGCATTCGTTGAAACCCAAGATTTGAGAAGTA 218212 Query 68806 GATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTA 68865 || ||||||||||| || || | | | | || | ||||||||| || || || Sbjct 218211 GAGGCAGTTGGCATTGGAGCTAGAAGAAGAGAGTTACGTAGACCATGTTTTGCCATCTTT 218152 Query 68866 TCTTTTAGATGTT-TCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTG 68924 | || | ||| |||||||||||||||| || || ||| ||| | |||||||| Sbjct 218151 GCCTTCA-ATGAAGTCCAATCCCAAAGATCTGAAGGAGTGACACCCCACATGTCGTATTG 218093 Query 68925 TAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGC 68984 || ||| | |||||| ||| | || || ||||||||||| |||||| Sbjct 218092 AAGTTCTCCTTGACTTGCTGGACTTCCCTCGTAAGTAGAGTAAGGTCCTTCGATTTCAGC 218033 Query 68985 TAGTTCAC---AACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT 69041 || ||| ||| | || || || ||| ||| || |||||||| || | || Sbjct 218032 TAATTCGATCGAACGTTCC---AAAGCGGCGTGATAGATGGTTTCGAAGATTTGGACGTT 217976 Query 69042 GAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAA 69101 ||| | | |||||| || ||||| |||||| | | || || ||||| || | Sbjct 217975 GAGCTTACGAGCTTCTGGAGAGTCGAAAGGATAACCCATGATCATGAAAGCATCAGCTAG 217916 Query 69102 TCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAAT 69161 || ||||| || || ||||| || | ||| | || |||| |||||| | Sbjct 217915 ACCTTGAACACCGATTCCGATTGGACGATGACGGAAGTTGGAACGACGAGCTTCCTCGAC 217856 Query 69162 AGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACT-ACTTTAACCACGT 69220 ||| || || || || || || || || || || |||| || | | || || || Sbjct 217855 AGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTCC-ACAAATGACCTTGGAGAC-- 217799 Query 69221 CCTTTAGTTTGAGAAAATCAAA-TCGTCCATCTA--TAACA---------AACATATTCA 69268 ||| | |||| || || |||| ||| || || || | | Sbjct 217798 -CTTGTG---GAGACGTTCGAAGTCGTAGGTCTTGGTAGCAGCGTCGATGAAGGTTGGAA 217743 Query 69269 GTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA---TATTGTATTA 69325 | || | || || | || || || ||||| |||| | | ||| |||| || | Sbjct 217742 GAGCGATGGAAGCCAAGTTGCAGACGGCTACTTCATCCGGA---GCACTGTATTCGATGA 217686 Query 69326 TCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGT 69385 | || ||||| || || || ||||| || || || || | ||| ||||||||| ||| Sbjct 217685 TTTCAGTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCTGGTTACTCTTTCTGT 217626 Query 69386 TACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAG 69445 | |||||||||||||| || | ||| | |||||||| | |||| ||| | || | Sbjct 217625 TTGCAGCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTTGAGCTTCCAAGATGG 217566 Query 69446 ATTTCCAAACGACCCTAGCATTTATTACGGT-CTTGTAACGCTTC--TCTTTTTCATATT 69502 | ||||| ||| || | |||| || | | || | || ||| || | Sbjct 217565 CATACCAAAGCTTTTGAGCTTTGA---CGGTTCTCTTGGCTCTACCTTCGGATTCGTACT 217509 Query 69503 --GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATT 69560 ||||| | ||| ||||||||| ||||| | || ||| | | || || ||||| Sbjct 217508 TGGTGTAAAGAGC--TTCGAATTCCTCTCCGTAGACGTCAGCGAGACCTGGGCATTCTCC 217451 Query 69561 TGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAAT 69620 ||||| | | ||||| | || | | || |||| ||||| || || || ||||| Sbjct 217450 AGGACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAAGAGGTCTGGAAT 217391 Query 69621 CCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAG 69680 ||||||||| || || ||||||| | | ||| || ||||| || || || Sbjct 217390 CCAAAGAGCGTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTGGTTCTTACGTAG 217331 Query 69681 ATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGG 69740 ||| | || || | | || ||||||||||| || | || || || | | | || || Sbjct 217330 ATCCAAGAATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGCAAAGGCACCTGG 217271 Query 69741 TCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG 69800 || || |||||||| ||||| | |||||| |||||||| || ||||| | ||||| || Sbjct 217270 ACGCTTGTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGACACGTAGCATGGG 217211 Query 69801 AATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATT 69860 || ||||| || || ||||| ||||||| ||| ||| ||| || | ||||| || Sbjct 217210 AACGATACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGTTCCACGAATGTT 217151 Query 69861 ACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT-TTCAATG 69919 | ||||| ||||| ||||| | || ||||| | |||| |||| || | | Sbjct 217150 GTGGACGTTGAGACCGATTCCACCTGCAGTCTTGGAGATCATGGCAC-ACGTCTTGAGAG 217092 Query 69920 TGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTT 69979 |||| || || || || ||| || || ||||| | | | |||||| |||||||| Sbjct 217091 TGTCGTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAAACAGGAAGACATTT 217032 Query 69980 GATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAG 70039 || ||| |||||| || || || | || ||||| ||||| ||||| || || | Sbjct 217031 GAGAATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGTGAAAGTCTTCTCGG 216972 Query 70040 AAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGA 70099 | | || || || || || || || ||| | || ||| ||||| || |||| Sbjct 216971 ACATGAGGTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATGGATTCCAATGGCGA 216912 Query 70100 CACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATG 70159 ||||||| | ||| || ||||| ||||| | || ||| ||| | ||||| | Sbjct 216911 CACGCATGAGCATGTGTTGAGGACGTTCGGCGACCTTTCCATTGATTCGTAGAAGGTAAG 216852 Query 70160 ATTTTTCCAGAGTTTTAAACCCAAAATAGTT 70190 || | || ||||| || || || || |||| Sbjct 216851 ATCTCTCAAGAGTCTTGAAACCGAAGAAGTT 216821 >seq23 Length=563827 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 ||| || ||||| || ||||| || |||||||| ||| |||||||||||||| || Sbjct 139420 TAAACAAGCGAAATCGGTATGTAAACCTTCATCTCTTGAAATCAATTCGTTAGAAAAAGT 139479 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 | || ||||||| ||| | ||| |||| ||| || || | ||||||||||||||| || Sbjct 139480 CAAACCTGGCATTAAACCTCTCTTCTTGATCCAGAAGATTGAAGCAAAAGATCCAGAGAA 139539 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 ||||| ||||| || || || || || || | ||| || Sbjct 139540 AAAGATACCTTCGACGGCAGCGAAAGCTACTAATCTTTC 139578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908259059320