Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq28 194 2e-44 >seq28 Length=226377 Score = 194 bits (214), Expect = 2e-44 Identities = 929/1460 (64%), Gaps = 35/1460 (2%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||||| ||||| ||||| |||||||| || |||||||||||| | || || Sbjct 218269 GTAGATGTTTGAAGTGTAAGGTTCGAAGCATTCGTTGAAACCCAAGATTTGAGAAGTAGA 218210 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCT----CCTTGATGC 110822 ||| ||||||||||| || | | |||| |||||| ||||| | | | | ||| Sbjct 218209 GGCAGTTGGCATTGGAGCTAGAAGAAGAGAGTTACGTAGACCATGTTTTGCCATCTTTGC 218150 Query 110823 GTTCCTTGAGAAC--ATCCCAGTCGTAGTTGAGCTTG-GTTTCACCTTCCCACATGTCAA 110879 ||| ||| | |||||| || | | | || |||| ||||||||| Sbjct 218149 CTTCAATGAAGTCCAATCCCAA----AGATCTGAAGGAGTGACACC---CCACATGTCGT 218097 Query 110880 ACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTT 110939 | ||||| | ||||| || ||| ||||| | || || | |||| | || Sbjct 218096 ATTGAAGTTCTCCTTGACTTGCTGGACTTCCCTCGTAAGTAGAGTAAGGTCCTTCGATTT 218037 Query 110940 CAGCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 110998 |||| ||||| | | || |||| | |||||||| |||||||| ||||| | | Sbjct 218036 CAGCTAATTCGATCGAACGT-TCCAAAGCGGCGTGATAGATGGTTTCGAAGATTTGGACG 217978 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 || | || ||||| || || || | || | | || || |||| || Sbjct 217977 TTGAGCTTACGAGCTTCTGGAGAGTCGAAAGGATAACCCATGATCATGAAAGCATCAGCT 217918 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 |||||||||||||| | || || || | || || | || || || || ||| Sbjct 217917 AGACCTTGAACACCGATTCCGATTGGACGATGACGGAAGTTGGAACGACGAGCTTCCTCG 217858 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 || || || | || |||| |||| ||| || ||| || | ||| | || Sbjct 217857 ACAGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTCCACAAATGACCTTGGAGACC 217798 Query 111179 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCG 111238 | || || ||| | || | || || | | | || | ||||||| ||| Sbjct 217797 TTGTGGAGACGTTCGAAGTCGTAGGTCTTGGTAGCAGCGTCGATGAAGGTTGGAAGAGCG 217738 Query 111239 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 111298 || || ||||| ||||| || || |||||| | | |||| || | ||||| ||| Sbjct 217737 ATGGAAGCCAAGTTGCAGACGGCTACTTCATCCGGAGCACTGTATTCGATGATTTCAGTA 217678 Query 111299 CATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTC-TTCTTGTTGCACGC 111357 || | ||| || | ||| || || || | ||||| ||||||||| |||| ||||| || Sbjct 217677 CAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCTGGTTACTCTTTCTGTTTGCA-GC 217619 Query 111358 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 |||||||| |||||||| || | || || || || || | || | || || | ||| Sbjct 217618 GTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTTGAGCTTCCAAGATGGCATACCA 217559 Query 111418 AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAG 111477 || | ||| || | ||||| | || || | |||||||| ||||| || Sbjct 217558 AAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACCTTCGGATTCGTACTTGGTGTAAAG 217499 Query 111478 GGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT-CTGGACAGAAAA 111536 ||||| || ||||| || |||| | ||||||||| || || | | ||||| | | Sbjct 217498 AGCTTCGAATTCCTCTCCGTAGACGTCAGCGAGACCTGG-GCATTCTCCAGGACAAAGTA 217440 Query 111537 GAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 111594 ||||||| | || | ||| ||| || | ||||||||| |||||||||||||| || | Sbjct 217439 GAGACCAAT--CCTCGTTCTTCTCTACTCTCTTCATGAAGAGGTCTGGAATCCAAAGAGC 217382 Query 111595 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 111654 | || || ||||| ||| | || || | || ||||| |||| || | ||| Sbjct 217381 GTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTGGTTCTTACGTAGATCCAAGAA 217322 Query 111655 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC-- 111712 || | || || | ||||||||||| | |||| || | | || | ||||| Sbjct 217321 TTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGCAAAGGCACC---TGGACGCTT 217265 Query 111713 ----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 111768 || |||||| || || | || ||| ||| | || || ||||| |||| || Sbjct 217264 GTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGACACGTAGCATGGGAACGAT 217205 Query 111769 ACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGAT 111828 ||| | || ||||| || || ||| |||| | | | | | | |||| Sbjct 217204 ACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGTTCCACGAATGTTGTGGAC 217145 Query 111829 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 111888 || | || || || || || ||| ||||| |||||| | | ||||| | || Sbjct 217144 GTTGAGACCGATTCCACCTGCAGTCTTGGAGATCATGGCACACGTCTTGAGAGTGTCGTA 217085 Query 111889 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 111948 ||| || | ||| ||||| ||||| ||| || | ||| || ||||| || | Sbjct 217084 GATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAAACAGGAAGACATTTGAGAATG 217025 Query 111949 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTT 112008 || || ||||| |||||||| ||||| | ||||| |||| | | |||||| Sbjct 217024 AGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGTGAAAGTCTTCTCGGACATGAG 216965 Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 || || ||||| | | | || | ||| || ||||| || || ||||| ||||| Sbjct 216964 GTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATGGATTCCAATGGCGACACGCAT 216905 Query 112069 GAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT-AGCTCTTCT 112127 || ||||| || || ||| || | |||| || ||| |||| | || || ||| Sbjct 216904 GAGCATGTGTTGAGGACGTTCGGCGACCTTTCCATTGATTCGTAGAAGGTAAGATC-TCT 216846 Query 112128 CAAGGGTTTTGAGACCAAAG 112147 |||| || |||| ||| ||| Sbjct 216845 CAAGAGTCTTGAAACCGAAG 216826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031505424800