Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq28 242 4e-59 >seq28 Length=226377 Score = 242 bits (268), Expect = 4e-59 Identities = 899/1390 (65%), Gaps = 39/1390 (3%) Strand=Plus/Plus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| ||||||| || ||||| || || ||||| ||| | || | | | |||| Sbjct 216897 ACATGCTCATGCGTGTCGCCATTGGAATCCATGGAACCGACGTCGAAAAGGCCATCGAGA 216956 Query 104289 CATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTG 104348 | || || |||||| | | |||| ||||| | ||||| |||||||| |||| Sbjct 216957 CTTATAACCTCATGTCCGAGAAGACTTTCACCCACGCTTCTCCAACTCTCTTCAACGCTG 217016 Query 104349 GTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCA 104408 | || || | |||||||| || ||| | || ||| ||||| ||||| ||| Sbjct 217017 GAACTCCTCATTCTCAAATGTCTTCCTGTTTCTTGGTCACCATGAAGGACGACTCCATCG 217076 Query 104409 ACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTG 104468 | || ||||| | ||||| | | |||||| ||||| ||| || || || || | Sbjct 217077 AAGGAATCTACGACACTCTCAAGACGTGTGCCATGATCTCCAAGACTGCAGGTGGAATCG 217136 Query 104469 GGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAAT 104528 | | || |||| | | | | | | |||| ||| || || ||||| | Sbjct 217137 GTCTCAACGTCCACAACATTCGTGGAACTGGATCTTACATTGCTGGAACCAATGGATTCT 217196 Query 104529 CAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAG 104588 | | ||||| |||| ||||| || || | ||| ||| || | || || |||||| Sbjct 217197 CCAACGGTATCGTTCCCATGCTACGTGTCTACAACAACACTGCTAGATACGTCGATCAAG 217256 Query 104589 CTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATA 104642 || ||||| | || | | || |||| | ||||||||||| | || Sbjct 217257 GAGGAAACAAGCGTCCA---GGTGCCTTTGCCATCTACTTGGAGCCATGGCATTCAGACG 217313 Query 104643 TCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC-GCGAT 104701 || | || ||| | || | ||| ||||| || | ||||| | | ||||| | || Sbjct 217314 TCTTCGAATTCTTGGATCTACGTAAGAACCACGGAAAGGAGGAAGTTC-GTGCCAGAGAA 217372 Query 104702 CTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAAT 104761 || |||| |||||| ||||||||||| ||||||||||||||||| ||| ||| | || Sbjct 217373 CTGTTCTACGCTCTTTGGATTCCAGACCTCTTCATGAAGAGAGTAGAGAAGAACGAGGAT 217432 Query 104762 TGGTCTCTCTTTTGTCC-AGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTT 104820 |||||||| ||||||| || || || || |||||| | || | | || ||||| || Sbjct 217433 TGGTCTCTACTTTGTCCTGGAGAATGC-CCAGGTCTCGCTGACGTCTACGGAGAGGAATT 217491 Query 104821 TGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGC 104880 ||||| |||||||| |||||||| |||||| | || | || || |||| Sbjct 217492 CGAAGCTCTTTACACCAAGTACGAATCCGAAGGTAGAGCCAAGAGAACCGTCAAAGCTCA 217551 Query 104881 CGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTA 104940 | | ||| | || || | | |||||||||| ||||| | || ||||||||||| Sbjct 217552 AAAGCTTTGGTATGCCATCTTGGAAGCTCAAACCGAAACTGGAAATCCTTACATGCTTTA 217611 Query 104941 CAAAGACGCCTGTAACCA-AAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCA 104999 ||| |||| ||| || || ||||||||| || ||||| | || |||||| | || | Sbjct 217612 CAAGGACG-CTGCAAACAGAAAGAGTAACCAGAAGAACCTAGGAACCATCAAGTGCTCAA 217670 Query 105000 ATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCG 105059 | || ||||| |||||| | |||| | | ||||| || || || ||| | | Sbjct 217671 ACCTTTGTACTGAAATCATCGAATACAGTGCTCCGGATGAAGTAGCCGTCTGCAACTTGG 217730 Query 105060 CATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAAC 105119 | || |||||||| || | | | || | | || ||||| | || | ||| | Sbjct 217731 CTTCCATCGCTCTTCCAACCTTCATCGACGCTGCTACCAAGACCTACGACTTCGAACGTC 217790 Query 105120 TCCACGAAGTTACGAAAACTGTCA---CCAAAAACCTAAACAGAGTTATTGATAGAAATT 105176 ||||| | || | || |||| |||||| |||| | || || | || | Sbjct 217791 TCCACAAGGTCTCCAA---GGTCATTTGTGGAAACCTCAACAAGATCATCGACATCAACT 217847 Query 105177 TTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTG 105236 ||||| || ||| |||||| || || | | || |||||||| || |||||| Sbjct 217848 ACTACCCTGTCGAGGAAGCTCGTCGTTCCAACTTCCGTCATCGTCCAATCGGAATCGGTG 217907 Query 105237 TTCAGGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTCCGACGAAGC 105294 |||| ||||| || |||| ||||| || | | | | | || || || ||||| Sbjct 217908 TTCAAGGTCTAGCTGATGCTTTCATGATCATGG--GTTATCCTTTCGACTCTCCAGAAGC 217965 Query 105295 GAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTG-AGGCGAGTT 105353 | |||| | | || || || ||||| |||||||||||| | | | | | | Sbjct 217966 TCGTAAGCTCAACGTCCAAATCTTCGAAACCATCTATCACGCCGCTTTGGAACGTTCGAT 218025 Query 105354 CAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAG 105413 | || || || || | || || || || || | ||||| |||||| |||| Sbjct 218026 C-GAATTAGCTGAAATCGAAGGACCTTACTCTACTTACGAGGGAAGTCCAGCAAGTCAAG 218084 Query 105414 GGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGGGA--AGC 105471 | | ||||||| || |||||| |||| || ||||| | ||||| | Sbjct 218085 GAGAACTTCAATACGACATGTGG---GGTGTCAC--TCCTTCA-GATCTTTGGGATTGGA 218138 Query 105472 TCTCAAGGAACGCATCAAGG----AGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAA 105527 ||| ||| ||| | | | | ||||| |||||| ||| || | ||||||| Sbjct 218139 CTTCATTGAAGGCAAAGATGGCAAAACATGGTCTACGTAACTCTCTTCTTCTAGCTCCAA 218198 Query 105528 TGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGA 105587 ||||||| ||||| || | |||||||||||| || |||||||| ||||| ||||| Sbjct 218199 TGCCAACTGCCTCTACTTCTCAAATCTTGGGTTTCAACGAATGCTTCGAACCTTACACTT 218258 Query 105588 CGAACATCTA 105597 | |||||||| Sbjct 218259 CAAACATCTA 218268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260340682120